DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SILPO (3-isopropylmalate dehydrogenase OS=Silicibacter pomeroyi GN=leuB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.080e-44
Identity = 88/180 (48.89%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            S+ +LPGDGIGPEV+A  + ++   G   G+ F   E  +GG+A D+ GVPL +ET+A A+++DAVLLGA+GG K+D  +  +KPE GLL++R+ + +F+NLRPA     L D S+LKK++  G+D+M+VRELT G+YFG+PRG    E  E +G NT+ Y   E++R+AR AFE A +R
Sbjct:    5 SLLILPGDGIGPEVMAEVRKIIGWFGDKRGLNFDVSEDLVGGAAYDVHGVPLADETMAKAQEADAVLLGAVGGPKYDDLDFSVKPERGLLRLRKEMDLFSNLRPAQCFDALADFSSLKKDIVAGLDIMIVRELTSGVYFGEPRGI-FEEGNERVGINTQRYTESEIERVARSAFELAMRR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACSK (3-isopropylmalate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=leuB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.143e-44
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LLPGDGIGPE+IA  K VL+    L    F F E  +GG A+D  G PLPEETL  AK SDA+LLGA+GG KWD N    +PE GLLQIR+ L ++ANLRP  VL  L+ +STLK+EV   VDL++VRELTGG+YFG+PR      +GE+   +T +Y   E++RI   AF+ AR R
Sbjct:    5 ILLLPGDGIGPEIIAETKRVLEEIARLYHHTFQFVEGRIGGDAIDATGSPLPEETLDLAKGSDAILLGAVGGPKWDGNAPEKRPEKGLLQIRKALGLYANLRPVRVLKPLMGASTLKEEVLADVDLLIVRELTGGLYFGEPRERRQI-NGEDGAVDTLLYTRGEIERIVHQAFQFARTR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_XYLFT (3-isopropylmalate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=leuB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.361e-44
Identity = 90/179 (50.28%), Postives = 123/179 (68.72%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIG E++A A  VL+       +        +GG+A +  G PL +ETLA A+++DAVLLGA+GG +WD  +  L+PE GLL+IR  L +FANLRPA + PQL D+STLK EV  G+D+++VRELTGG+YFG+PRG  ++++GE   F+T  Y   E+ RI +V FE AR R
Sbjct:    5 ILILPGDGIGHEIVAEAVKVLEHVNVRHTLNMRLSFDALGGAAYEKYGSPLADETLARAREADAVLLGAVGGPQWDTIDPALRPERGLLKIRAQLGLFANLRPALLYPQLADASTLKPEVVAGLDILIVRELTGGLYFGQPRGSRISKNGEREAFDTLPYCESEIRRILKVGFEMARLR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_XANCP (3-isopropylmalate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=leuB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLE--GIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL    +    G+   + E+  GG+A D  G PL +ETL  A+ +DAVLLGA+GG +WD  +  L+PE GLL+IR  L +FANLRPA + PQL D+STLK EV  G+DL+++RELTGGIYFG+PRG    ++GE   ++T  Y+  E+ RIA+  FE AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLTRIDTQHTLGVTLVYDEL--GGAAYDKYGSPLADETLERARAADAVLLGAVGGPQWDTIDPALRPERGLLKIRSQLGLFANLRPALLYPQLADASTLKPEVVSGLDLLILRELTGGIYFGQPRGTRTLDNGERQAYDTLPYSESEIRRIAKAGFEMARLR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_XANC8 (3-isopropylmalate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=leuB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLE--GIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL    +    G+   + E+  GG+A D  G PL +ETL  A+ +DAVLLGA+GG +WD  +  L+PE GLL+IR  L +FANLRPA + PQL D+STLK EV  G+DL+++RELTGGIYFG+PRG    ++GE   ++T  Y+  E+ RIA+  FE AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLTRIDTQHTLGVTLVYDEL--GGAAYDKYGSPLADETLERARAADAVLLGAVGGPQWDTIDPALRPERGLLKIRSQLGLFANLRPALLYPQLADASTLKPEVVSGLDLLILRELTGGIYFGQPRGTRTLDNGERQAYDTLPYSESEIRRIAKAGFEMARLR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHORT (3-isopropylmalate dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=leuB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 90/180 (50.00%), Postives = 123/180 (68.33%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEK-HLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I  L GDGIGPEV+A  + V+          F  ++  +GG+A D  G PL ++T+A A  +DAVLLGA+GG KWD +    LKPE GLL++R+ L++FANLRPA V   L ++STLK E+  G+D+M+VRELTGG+YFG+PRG     +GE  G NT+VY  +E+ R+A+VAF+ A KR
Sbjct:    7 ILFLAGDGIGPEVMAQVRRVMDWLNQTGRTAFEVEDALVGGAAYDAQGTPLHDDTVALALAADAVLLGAVGGPKWDASLPFELKPERGLLRLRKDLELFANLRPAMVFDALAEASTLKTELVSGLDVMIVRELTGGVYFGQPRGISALPNGERRGVNTQVYDTHEIVRVAKVAFDLAGKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACHD (3-isopropylmalate dehydrogenase OS=Bacillus halodurans GN=leuB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 93/179 (51.96%), Postives = 120/179 (67.04%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPEV   A  VL+      G  F++++  +GG A+D VG PLPEETL   + +D +LLGA+GG KWD    HL+PE GLL +R+GL +FANLRP TV   L D+STLK +V +GVDL++VRELTGG+YFG+PR        EE+  +T +Y   E+ RI R AFE A  R
Sbjct:    5 IAVLPGDGIGPEVTDAAIEVLQAVADRFGHTFSYKKALLGGCAIDEVGTPLPEETLDVCRHADGILLGAVGGPKWDTLPGHLRPEKGLLGLRKGLNLFANLRPVTVYDSLADASTLKNDVIDGVDLLIVRELTGGLYFGEPRERRGEGETEEV-VDTLLYTRGEMRRIIRKAFELAMVR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_XYLFA (3-isopropylmalate dehydrogenase OS=Xylella fastidiosa GN=leuB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 90/179 (50.28%), Postives = 122/179 (68.16%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIG E++A A  VL+       +        +GG+A +  G PL +ETLA A+ +DAVLLGA+GG +WD  +  L+PE GLL+IR  L +FANLRPA + PQL D+STLK EV  G+D+++VRELTGG+YFG+PRG  ++++GE   F+T  Y   E+ RI +V FE AR R
Sbjct:    5 ILILPGDGIGHEIVAEAVKVLEHVNVRHTLNLRLSFDALGGAAYEKYGSPLADETLARARDADAVLLGAVGGPQWDTIDPALRPERGLLKIRAQLGLFANLRPALLYPQLADASTLKPEVVAGLDILIVRELTGGLYFGQPRGSRISKNGEREAFDTLPYCESEIRRILKVGFEMARLR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NEIMA (3-isopropylmalate dehydrogenase OS=Neisseria meningitidis serogroup A GN=leuB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 90/180 (50.00%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVL-KLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +L GDGIGPE++A    VL KL    +G++  ++  P+GG A D  G P PE T    +++DAVLLGA+G  ++D  ++ L+PE GLL IR+ L +FANLRPA + P+L ++STLK E+  G+D+++VRELTG IYFG+PRG  V E+GE  G+NT  Y+  E+ RIA VAF++A+KR
Sbjct:    5 IAILRGDGIGPEIVAETVRVLDKLIA--QGLDVGYEYAPLGGEAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFANLRPAILYPELANASTLKSEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNTMKYSESEIRRIAHVAFQSAQKR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPB (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB18) GN=leuB PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 88/181 (48.62%), Postives = 125/181 (69.06%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + LLPGDGIG EV+A  K ++    +     F  ++  +GG+A D   V + + T+A A+ SDAV+ GA+GG KWD      +PE GLL++R+ L +FANLRPA   P L DSS+LK+EV EG+D+M+VRELTGG+YFG+P+      +G++   +T+VY +YE+DRIARVAF+ ARKR
Sbjct:    4 HKLLLLPGDGIGTEVMAEVKRLIDWLNAQGIAHFETEDGLVGGAAYDADKVAITDATMAKAQASDAVIFGAVGGAKWDGVPYEARPEAGLLRLRKDLGLFANLRPAVCYPALADSSSLKREVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAIDTQVYDSYEIDRIARVAFDLARKR 184          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_SILPO1.080e-4448.893-isopropylmalate dehydrogenase OS=Silicibacter po... [more]
LEU3_BACSK3.143e-4454.193-isopropylmalate dehydrogenase OS=Bacillus clausi... [more]
LEU3_XYLFT5.361e-4450.283-isopropylmalate dehydrogenase OS=Xylella fastidi... [more]
LEU3_XANCP7.001e-4451.383-isopropylmalate dehydrogenase OS=Xanthomonas cam... [more]
LEU3_XANC87.001e-4451.383-isopropylmalate dehydrogenase OS=Xanthomonas cam... [more]
LEU3_RHORT7.001e-4450.003-isopropylmalate dehydrogenase OS=Rhodospirillum ... [more]
LEU3_BACHD7.001e-4451.963-isopropylmalate dehydrogenase OS=Bacillus halodu... [more]
LEU3_XYLFA9.144e-4450.283-isopropylmalate dehydrogenase OS=Xylella fastidi... [more]
LEU3_NEIMA9.144e-4450.003-isopropylmalate dehydrogenase OS=Neisseria menin... [more]
LEU3_RHOPB1.194e-4348.623-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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