DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NEIMB (3-isopropylmalate dehydrogenase OS=Neisseria meningitidis serogroup B GN=leuB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 90/180 (50.00%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVL-KLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +L GDGIGPE++A    VL KL    +G++  ++  P+GG A D  G P PE T    +++DAVLLGA+G  ++D  ++ L+PE GLL IR+ L +FANLRPA + P+L ++STLK E+  G+D+++VRELTG IYFG+PRG  V E+GE  G+NT  Y+  E+ RIA VAF++A+KR
Sbjct:    5 IAILRGDGIGPEIVAETVRVLDKLIA--QGLDAGYEYAPLGGEAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFANLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNTMKYSESEIRRIAHVAFQSAQKR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THETN (3-isopropylmalate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=leuB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 96/182 (52.75%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIGPEVI     VLK      G+ F  ++ P GG A+D  G P PEET      SDAVLLGA+GG KWD  E   +PE GLL +R+ L V+ANLRPA + P L D+S LK E+ E G+D++VVRELTGGIYFG PRG     +G    ++TEVY   E++RIA +AFE A +R
Sbjct:    2 YRIAVLPGDGIGPEVIEEGLKVLKAVEEKYGLRFDIKKYPFGGEAIDKYGEPYPEETRNGCLSSDAVLLGAVGGPKWDGLEGDKRPEAGLLALRKSLGVYANLRPAVLYPSLKDASPLKNELLEKGLDILVVRELTGGIYFG-PRGKEAIGYGFR-AYDTEVYETQEIERIAVIAFEAALRR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NEILA (3-isopropylmalate dehydrogenase (Fragment) OS=Neisseria lactamica GN=leuB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 90/180 (50.00%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVL-KLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +L GDGIGPE++A    VL KL    +G++  ++  P+GG A D  G P PE T    +++DAVLLGA+G  ++D  ++ L+PE GLL IR+ L +FANLRPA + P+L ++STLK E+  G+D+++VRELTG IYFG+PRG  V E+GE  G+NT  Y+  E+ RIA VAF++A+KR
Sbjct:    5 IAILRGDGIGPEIVAETVRVLDKLIE--QGLDAGYEYAPLGGEAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFANLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNTMKYSESEIRRIAHVAFQSAQKR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHOS4 (3-isopropylmalate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=leuB PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            S+ +L GDGIGPEV+A  K ++   G   G+ F   E  +GG+A D  G PL +ET+A A++ DAVLLGA+GG K+D  +  +KPE GLL++R+ + ++ANLRPA     L D S+LK+++  G+D+M+VRELT G+YFG+PRG      G   G NT+ Y   E+ R+AR AFE AR+R
Sbjct:    5 SLLILAGDGIGPEVMAEVKRIIGWFGEKRGVSFDVSEDLVGGAAYDAHGTPLADETMARAQEVDAVLLGAVGGPKYDVLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKRDIVAGLDIMIVRELTSGVYFGEPRGIFPDNEGGRFGVNTQRYTTEEIRRVARSAFELARRR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NEIG1 (3-isopropylmalate dehydrogenase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=leuB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 88/179 (49.16%), Postives = 126/179 (70.39%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +L GDGIGPE++A    VL    + +G++  ++  P+GG A D  G P PE T    +++DAVLLGA+G  ++D  ++ L+PE GLL IR+ L +FANLRPA + P+L ++STLK E+  G+D+++VRELTG IYFG+PRG  V E+GE  G+NT  Y+  E+ RIA VAF++A+KR
Sbjct:    5 IAILRGDGIGPEIVAETVRVLDKFIA-QGLDADYEYAPLGGEAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFANLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEHEGYNTMKYSESEIRRIAHVAFQSAQKR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACSU (3-isopropylmalate dehydrogenase OS=Bacillus subtilis GN=leuB PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 91/179 (50.84%), Postives = 117/179 (65.36%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LLPGDGIGPEV+  A +VLK        EF F+   +GG+A+D    PLPEET+AA K +DA+LLGA+GG KWD+N   L+PE GLL IR+ L +FANLRP  V   L D+S LKKE  + VD ++VRELTGG+YFG+P    V   GE+   +T  Y   E++R+ R  F+ A  R
Sbjct:    5 IALLPGDGIGPEVLESATDVLKSVAERFNHEFEFEYGLIGGAAIDEHHNPLPEETVAACKNADAILLGAVGGPKWDQNPSELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGLYFGQPSKRYVNTEGEQEAVDTLFYKRTEIERVIREGFKMAAAR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NITWN (3-isopropylmalate dehydrogenase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=leuB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 87/181 (48.07%), Postives = 125/181 (69.06%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y + LLPGDGIGPEV+A  K ++    +    +F  +E  +GG++ D   V + + T+A A  +DAVL GA+GG KWD     ++PE GLL++R+ L ++ANLRPA   P L +SS+LK EV EG+D+M+VRELTGG+YFG+P+      +G++   +T+VY  YE++RIARVAF+ ARKR
Sbjct:    4 YKLLLLPGDGIGPEVMAEVKRLVGWLDAQGIAKFETEEGLVGGASYDADKVSITDATMAKALAADAVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDLALYANLRPAICYPALAESSSLKPEVVEGLDIMIVRELTGGVYFGEPKTVTDLGNGQKRAVDTQVYDTYEIERIARVAFDLARKR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CHLCH (3-isopropylmalate dehydrogenase OS=Chlorobium chlorochromatii (strain CaD3) GN=leuB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 95/181 (52.49%), Postives = 117/181 (64.64%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I  +PGDGIG EV+A A  VL+      G     +E   GG++ D+ G  L + TL A K  DAVLLGA+GG KW+      KPE  LL+IR+ L +FANLRPA V   LVD+S+LK +V  G D +V RELTGGIYFG+PRGY      E  G+NT VY  YEV+RIAR+AFE AR+R
Sbjct:    3 YKIVSIPGDGIGTEVVAGAVAVLRQLEKKYGFTVEIEEHLFGGASYDVHGEMLTDATLEACKNCDAVLLGAVGGPKWENLPHEHKPEAALLKIRKELGLFANLRPAKVYDALVDASSLKADVVRGTDFVVFRELTGGIYFGQPRGY-----DENKGWNTMVYEKYEVERIARLAFEAARQR 178          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_JANSC (3-isopropylmalate dehydrogenase OS=Jannaschia sp. (strain CCS1) GN=leuB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 87/180 (48.33%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            S+ +LPGDGIGPEV+A  + ++   GS  GI F   E  +GG+A D  GVPL + T+  A+  DAVLLGA+GG  +D  +  +KPE GLL++R+ + ++ANLRPA     L D S+LK+E+  G+D+M++RELT G+YFG+PRG   TE  E +G NT+ Y   E+ R A  AFE AR+R
Sbjct:    5 SLLILPGDGIGPEVMAEVRKIIDWFGSARGISFDVSEDLVGGAAYDAHGVPLTDATMEKAQSVDAVLLGAVGGPAYDDLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKREIVSGLDIMILRELTSGVYFGEPRGIH-TEGNERVGINTQRYTETEIARAAHSAFELARRR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NITEU (3-isopropylmalate dehydrogenase OS=Nitrosomonas europaea GN=leuB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.553e-42
Identity = 87/179 (48.60%), Postives = 124/179 (69.27%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LL GDGIGPE++A A+ VL+     EG++   +   +GG A+D  G P PE T   A ++DA+LLGA+GG ++D   +  +PE GLL IR+ L +FANLRP  + P+L ++STLK EV  G+D+++VRELTG IYFG+PRG    + G+++GFNT +Y+  E+ RIA VAF+ A +R
Sbjct:    3 IALLAGDGIGPEIMAQAERVLRYFQQ-EGLQIELEPGLLGGCAVDATGEPFPEATRQLAIEADAILLGAVGGTQYDGLPREKRPEQGLLAIRKELNLFANLRPVVLYPELSNASTLKPEVVAGLDILIVRELTGDIYFGRPRGIEYRD-GQKVGFNTMIYSESEIRRIAHVAFQAAGRR 179          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_NEIMB1.194e-4350.003-isopropylmalate dehydrogenase OS=Neisseria menin... [more]
LEU3_THETN2.037e-4352.753-isopropylmalate dehydrogenase OS=Thermoanaerobac... [more]
LEU3_NEILA2.037e-4350.003-isopropylmalate dehydrogenase (Fragment) OS=Neis... [more]
LEU3_RHOS44.538e-4347.783-isopropylmalate dehydrogenase OS=Rhodobacter sph... [more]
LEU3_NEIG14.538e-4349.163-isopropylmalate dehydrogenase OS=Neisseria gonor... [more]
LEU3_BACSU4.538e-4350.843-isopropylmalate dehydrogenase OS=Bacillus subtil... [more]
LEU3_NITWN5.927e-4348.073-isopropylmalate dehydrogenase OS=Nitrobacter win... [more]
LEU3_CHLCH1.320e-4252.493-isopropylmalate dehydrogenase OS=Chlorobium chlo... [more]
LEU3_JANSC2.252e-4248.333-isopropylmalate dehydrogenase OS=Jannaschia sp. ... [more]
LEU3_NITEU6.553e-4248.603-isopropylmalate dehydrogenase OS=Nitrosomonas eu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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