DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_DESVH (3-isopropylmalate dehydrogenase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.558e-42
Identity = 92/181 (50.83%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +I LLPGDGIGPE++A    VL       G   +     +GG+A+D  G PLP+ T+ A + SDAVLLGA+GG KWD      +PE GLL IR+ L +FANLRPA + P+L  +  L+ ++ A G+DL+VVRELTG +YFG+P G   T  G   GFNT +Y   EV RIARVAF+TAR R
Sbjct:    4 NICLLPGDGIGPEIVAQGTKVLDAVARRFGHTVSTSSALIGGAAIDATGSPLPDATVEACRTSDAVLLGAVGGPKWDDLPSEKRPEKGLLGIRKALGLFANLRPAALFPELAGACLLRADIAAAGLDLVVVRELTGDVYFGQPAGI-ETRDGLRTGFNTMIYDEDEVRRIARVAFDTARAR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU32_BRAJA (3-isopropylmalate dehydrogenase 2 OS=Bradyrhizobium japonicum GN=leuB2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.118e-41
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + LLPGDGIGPEV+   K ++    S    +F      +GGSA D   V + E  +A A  +DA++ GA+GG KWD     ++PE GLL++R+ L +FANLRPA   P L D+S+LK+E  EG+D+M+VRELTGG+YFG+P+      +G++   +T+VY  YE++RIARVAF+ A+KR
Sbjct:    4 HKLLLLPGDGIGPEVMGEVKRLIDWLNSAGIAKFETDTGLVGGSAYDAHKVSISEGDMAKALAADAIIFGAVGGPKWDAVPYEVRPEAGLLRLRKDLGLFANLRPAVCYPALADASSLKREAVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAIDTQVYDTYEIERIARVAFDLAKKR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHIME (3-isopropylmalate dehydrogenase OS=Rhizobium meliloti GN=leuB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.460e-41
Identity = 84/180 (46.67%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ LLPGDGIGPE +A  + ++    +     F   E  +GGSA D  G  + E  +A A  +DAVL GA+GG KWD     ++PE GLL++R+ L++FANLRPA   P L ++S+LK E+ EG+D+++VRELTGG+YFG+P+      +G++ G +T+VY  YE++RIA VAFE AR R
Sbjct:    5 NLFLLPGDGIGPEAMAEVRKIIAYMNAERDAGFVTDEGLVGGSAYDAHGAAISEGDMAKALAADAVLFGAVGGPKWDAVPYEVRPEAGLLRLRKDLELFANLRPAICYPALANASSLKPELVEGLDILIVRELTGGVYFGEPKEIVDLGNGQKRGIDTQVYDTYEIERIAGVAFELARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_MOOTA (3-isopropylmalate dehydrogenase OS=Moorella thermoacetica (strain ATCC 39073) GN=leuB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.907e-41
Identity = 90/182 (49.45%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPET-GLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIGPE++  A  VL+      GIEF F E  +GG+A+D  G+ LP ETL   +QSDAVLLGA+GG KWD      +PET  LL +R+ L ++ANLRPA +   LV++S LKKE+  G DL++VRELTGG+YFG  +     E   E+ ++T  Y   E++RI R+AF  AR+R
Sbjct:    2 YKIAVLPGDGIGPEIVPEAVKVLEAVSRRVGIEFQFTEALVGGAAIDARGIALPPETLELCRQSDAVLLGAVGGPKWDTLPPAERPETAALLPLRKELGLYANLRPAFLYDSLVEASPLKKEIVTGTDLIIVRELTGGLYFGAKKREQTAE--GEMAYDTMYYTRAEIERIVRLAFTIARQR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_DESDG (3-isopropylmalate dehydrogenase OS=Desulfovibrio desulfuricans (strain G20) GN=leuB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.907e-41
Identity = 94/180 (52.22%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKE-VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LL GDGIGPE++     VL+      G +  F +  +GG+A+D  G PLP+ET+ A K + AVLLGA+GG +WD      +PE GLL IR+ L +FANLRPA + P+L  +  L+ + VA G+D+MVVRELTGGIYFG P G   T  G    FNT VY   EV RIARVAFE ARKR
Sbjct:    5 ICLLAGDGIGPEIMEQGVRVLETVAGKFGHDMEFTDALIGGAAIDETGDPLPQETVEACKAAQAVLLGAVGGPRWDNLTGAERPEAGLLGIRKALGLFANLRPAKLFPELASACFLRPDIVANGIDVMVVRELTGGIYFGTPAG-EETRDGLRTAFNTMVYNEEEVRRIARVAFEAARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYMTH (3-isopropylmalate dehydrogenase OS=Symbiobacterium thermophilum GN=leuB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.490e-41
Identity = 90/182 (49.45%), Postives = 114/182 (62.64%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKE-VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I  LPGDGIGPEV   A  VL+ A +  G    F E  +GG+A D VG P P+ET  A  ++DA+L GA+GG +++     L+PE GLL IR+   ++ANLRP  + P L D+S LK E +  GVD ++VREL GGIYFG+PRG      G   G NTEVY   E+ RIAR+ FE AR R
Sbjct:    6 YHIACLPGDGIGPEVTRGAVTVLQAAAAAYGFRLEFSEYLVGGAAYDAVGTPFPDETRDACDRADAILFGAVGGPRYEGLPWDLRPEAGLLAIRKRYDLYANLRPILLYPPLKDASPLKNEIIGGGVDFIIVRELVGGIYFGEPRGIETLPDGTRRGVNTEVYTDAEIARIARMGFEIARGR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHILO (3-isopropylmalate dehydrogenase OS=Rhizobium loti GN=leuB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.252e-41
Identity = 84/177 (47.46%), Postives = 119/177 (67.23%), Query Frame = 1
Query:  142 LLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            LLPGDGIGPE +A  K ++       G  FA  E  +GG A D  G  + +  +A A  +DAVL GA+GG KWD     ++PE GLL++R+ +++FANLRPA   P L  SS+LK+EV EG+D+++VRELTGG+YFG+P+      +G++ G +T+VY  +E++RI+ VAFE AR R
Sbjct:    8 LLPGDGIGPEAMAEVKKLISAMNEKLGSGFATDEGLVGGCAYDAHGAAISDADMAKAMAADAVLFGAVGGPKWDAVPYEVRPEAGLLRLRKDMELFANLRPAICYPALAASSSLKQEVVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQVYDTFEIERISGVAFELARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PROM9 (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain MIT 9312) GN=leuB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.252e-41
Identity = 88/183 (48.09%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I LL GDGIGPE+  V+K VLK             E   GG A +  G P P+ETL   K+ DAVLL  +G  K+D   + L+PE+GLL++R  L +FAN+RP  +   LV++STLKKE+ E VDL+VVREL GGIYFGKPRG+ +T       FNT VY + E++RI  +A + A +R
Sbjct:    2 KNYKIVLLSGDGIGPEISEVSKKVLKKLSRKHNFNIEIIEKLFGGIAYEKYGTPAPDETLDQCKKCDAVLLACVGDIKYDSLARELRPESGLLKLRSALGLFANIRPVKIRKSLVNTSTLKKEIVENVDLIVVRELIGGIYFGKPRGH-ITNTKIPKAFNTMVYDSAEIERITEIAIKIANQR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPA (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris GN=leuB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.248e-41
Identity = 84/181 (46.41%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + LLPGDGIG EV+A    ++          F  +   +GG+A D   V + + T+A A+ SDAV+ GA+GG KWD      +PE GLL++R+ L +FANLRPA   P L DSS+LK++V EG+D+M+VRELTGG+YFG+P+      +G++   +T+VY  YE++RI RVAF+ ARKR
Sbjct:    4 HKLLLLPGDGIGTEVMAEVSRLIDWLNKAGIASFETEHGLVGGAAYDADKVAITDATMALAQASDAVIFGAVGGPKWDGVPYDARPEAGLLRLRKDLGLFANLRPAVCYPALADSSSLKRDVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAVDTQVYDTYEIERIGRVAFDLARKR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BURS3 (3-isopropylmalate dehydrogenase OS=Burkholderia sp. (strain 383) GN=leuB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.462e-41
Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL         +F  ++ P+GG+  +  G PLP+ TL  AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   PQLVD+S LK E+  G+D+++VREL G IYFG+PRG          GE  GF+T  Y+  EV RIA VAF+ ARKR
Sbjct:    3 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEQAPVGGAGYEASGHPLPDATLKLAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRTAPDGLFAGEREGFDTMRYSEPEVRRIAHVAFQAARKR 181          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_DESVH8.558e-4250.833-isopropylmalate dehydrogenase OS=Desulfovibrio v... [more]
LEU32_BRAJA1.118e-4146.413-isopropylmalate dehydrogenase 2 OS=Bradyrhizobiu... [more]
LEU3_RHIME1.460e-4146.673-isopropylmalate dehydrogenase OS=Rhizobium melil... [more]
LEU3_MOOTA1.907e-4149.453-isopropylmalate dehydrogenase OS=Moorella thermo... [more]
LEU3_DESDG1.907e-4152.223-isopropylmalate dehydrogenase OS=Desulfovibrio d... [more]
LEU3_SYMTH2.490e-4149.453-isopropylmalate dehydrogenase OS=Symbiobacterium... [more]
LEU3_RHILO3.252e-4147.463-isopropylmalate dehydrogenase OS=Rhizobium loti ... [more]
LEU3_PROM93.252e-4148.093-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_RHOPA4.248e-4146.413-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_BURS39.462e-4147.543-isopropylmalate dehydrogenase OS=Burkholderia sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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