DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHOP2 (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 83/181 (45.86%), Postives = 119/181 (65.75%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + LLPGDGIG EV+A    ++          F  +   +GG+A D   V + + T+A A+ SDAV+ GA+GG KWD      +PE GLL++R+ L +FANLRPA   P L ++S+LK EV EG+D+M+VRELTGG+YFG+P+      +G++   +T+VY  YE++RI RVAF+ ARKR
Sbjct:    4 HKLLLLPGDGIGTEVMAEVSRLIDWLNKAGIASFETEHGLVGGAAYDADKVAITDATMALAQASDAVIFGAVGGPKWDAVPYDARPEAGLLRLRKDLALFANLRPAVCYPALAEASSLKPEVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAIDTQVYDTYEIERIGRVAFDLARKR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CLOAB (3-isopropylmalate dehydrogenase OS=Clostridium acetobutylicum GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y + ++PGDGIG E++  A  VL+  G+    +F F E+  GG A+D  GVPLP ETL   K SDAVLLGA+GG KWD      +PE  L+ +R GL ++ANLRPA V   L  +S LK+E+  +GVDL+VVRELTGGIYFG+ RG  + ++G    ++TE Y   E+ RIA VAF+ A KR
Sbjct:    2 KEYKVAVIPGDGIGVEIVGEALKVLEKVGAKYDTKFNFTEVKAGGCAIDEFGVPLPNETLEICKNSDAVLLGAVGGPKWDTLPGEKRPEKALMGLRGGLGLYANLRPAKVYDILKSASPLKEEIINKGVDLLVVRELTGGIYFGE-RGRDI-QNGINSAYDTERYNVEEIKRIAHVAFKAALKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BURTA (3-isopropylmalate dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL         +F  +  P+GG+  +  G PLP+ TLA AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   PQLVD+S LK E+  G+D+++VREL G IYFG+PRG          GE  GF+T  Y+  EV RIA VAF+ A+KR
Sbjct:    3 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEHAPVGGAGYEASGHPLPDATLALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQAAQKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BURPS (3-isopropylmalate dehydrogenase OS=Burkholderia pseudomallei GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL         +F  ++ P+GG+  +  G PLP+ TLA AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   PQLVD+S LK E+  G+D+++VREL G IYFG+PRG          G   GF+T  Y+  EV RIA VAF+ ARKR
Sbjct:    3 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEQAPVGGAGYEASGHPLPDATLALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGAREGFDTMRYSEPEVRRIAHVAFQAARKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BURP1 (3-isopropylmalate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL         +F  ++ P+GG+  +  G PLP+ TLA AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   PQLVD+S LK E+  G+D+++VREL G IYFG+PRG          G   GF+T  Y+  EV RIA VAF+ ARKR
Sbjct:    3 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEQAPVGGAGYEASGHPLPDATLALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGAREGFDTMRYSEPEVRRIAHVAFQAARKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BURMA (3-isopropylmalate dehydrogenase OS=Burkholderia mallei GN=leuB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.236e-40
Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL         +F  ++ P+GG+  +  G PLP+ TLA AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   PQLVD+S LK E+  G+D+++VREL G IYFG+PRG          G   GF+T  Y+  EV RIA VAF+ ARKR
Sbjct:    3 IAVLPGDGIGPEIVNEAVKVLNALDE----KFELEQAPVGGAGYEASGHPLPDATLALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGAREGFDTMRYSEPEVRRIAHVAFQAARKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THIFE (3-isopropylmalate dehydrogenase OS=Thiobacillus ferrooxidans GN=leuB PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40
Identity = 87/179 (48.60%), Postives = 117/179 (65.36%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +  GDGIGPE++A A+ VL        +     E  +GG+ALD    PLP  +L  A  +DAV+LGA+GG +WD      +PE GLL++R+GL ++ANLRPA + PQL+D+S L+ E+   VD++VVRELTG IYFG+PRG  V + G+  GFNT VY   E+ RIA VAF  A+ R
Sbjct:    4 IAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVID-GKRRGFNTMVYDEDEIRRIAHVAFRAAQGR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_VIBPA (3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40
Identity = 91/185 (49.19%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL       GI F  +E  +GG A+D  G PLPE T+ A ++SDAVL G++GG KW+    + +PE G LL +R+  ++F NLRPA +   L   S L+ +++  G D++VVRELTGGIYFG+P+G    E   E  F+TEVY  YE++RIA++AFE+AR R
Sbjct:    4 KSYKIAVLPGDGIGPEVMAQAHKVLDAIEQKHGISFEREEHDVGGIAIDNHGCPLPESTVTACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHAGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKG-REGEGANEKAFDTEVYHRYEIERIAKIAFESARLR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_VIBCH (3-isopropylmalate dehydrogenase OS=Vibrio cholerae GN=leuB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40
Identity = 91/183 (49.73%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIGPEV+A A  VL       GI F+ +E  +GG A+D  G PLPE TL A +++DAVL G++GG KW+    + +PE G LL +R+  ++F NLRPA +   L   S L+ ++ A G D++VVRELTGGIYFG+P+G    E   E  F+TEVY  +E++RIAR+AFE+AR R
Sbjct:    6 YKIAVLPGDGIGPEVMAQAHKVLDAIEQKHGIRFSREEHDVGGIAIDNHGCPLPESTLRACEEADAVLFGSVGGPKWEHLPPNEQPERGALLPLRKHFQLFCNLRPAQIHQGLEAFSPLRADISARGFDIVVVRELTGGIYFGQPKG-REGEGAHEKAFDTEVYHRFEIERIARIAFESARLR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CAUCR (3-isopropylmalate dehydrogenase OS=Caulobacter crescentus GN=leuB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40
Identity = 87/180 (48.33%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ LLPGDGIGPEV A    V ++A +L   +    E   GG++ D  G PL +E    A  SDAVL+GA+GG KW    +HL+PE GLL +R+ + VFANLRPA     L  +S+LK E+  G+D+M VREL GG+YFG+PRG      G++ GF+T+VY   E++R+ RVAFE AR R
Sbjct:    3 TLLLLPGDGIGPEVCA---QVRRVAAALTP-DLKVDEALYGGASYDTHGTPLTDEVREQALASDAVLMGAVGGPKWADAPRHLRPEAGLLNLRKAMDVFANLRPAYCFEALAGASSLKPELVSGLDIMFVRELVGGVYFGQPRGIEDLADGQKKGFDTQVYTTSEIERVGRVAFELARGR 178          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_RHOP21.236e-4045.863-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_CLOAB1.236e-4050.003-isopropylmalate dehydrogenase OS=Clostridium ace... [more]
LEU3_BURTA1.236e-4047.543-isopropylmalate dehydrogenase OS=Burkholderia th... [more]
LEU3_BURPS1.236e-4047.543-isopropylmalate dehydrogenase OS=Burkholderia ps... [more]
LEU3_BURP11.236e-4047.543-isopropylmalate dehydrogenase OS=Burkholderia ps... [more]
LEU3_BURMA1.236e-4047.543-isopropylmalate dehydrogenase OS=Burkholderia ma... [more]
LEU3_THIFE1.614e-4048.603-isopropylmalate dehydrogenase OS=Thiobacillus fe... [more]
LEU3_VIBPA2.108e-4049.193-isopropylmalate dehydrogenase OS=Vibrio parahaem... [more]
LEU3_VIBCH2.108e-4049.733-isopropylmalate dehydrogenase OS=Vibrio cholerae... [more]
LEU3_CAUCR2.108e-4048.333-isopropylmalate dehydrogenase OS=Caulobacter cre... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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