DN621454

Overview
NameDN621454
Unique NameDN621454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621454 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = -3 
Query:  357 RSLQPNVKAMLLAKLREYKSDLNKLKREFKRVXXXXXXXXXXXSGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 743
            R + P  + M   ++R YK ++ KL+ +FKR                D N  S  QR  L  + ER+ +S  R+    ++ +ETE++G  ++E+L+  RE +  +R +L   D  + KS ++L+ M RR
Sbjct:   60 REIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDDGNS-SENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187
The following BLAST results are available for this feature:
BLAST of DN621454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VTI1A_HUMAN4.185e-1129.46Vesicle transport through interaction with t-SNARE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621454 ID=DN621454; Name=DN621454; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTGATCAGGTGATTCAACTTGTATCATTTAGTTTCACGGG
CTCACAAATAAAAATTTCAAGCAAAGAAATTGAACAATGATAATTGATAA
AGGCAATACATCAGAAATGACATAAGATACAACCAATTATTGATCAAGTA
GATAACATGAAGAAAAATGGGAATATATATCCATTAAATCCCCGGTAACT
TTGTACAACATGCACATAAAGCAACAGAACTTTCCTTGAACTTGAGCATT
TGAAATGGTCAGACTAGTGATGTGCAAGCTTATAAAAGAGGATAAAGATT
ATGGCAATGACAAGAGCTACAATTATTGAGCCAACGATCCATTTGTTCCT
GGTCATCCTCCGTGACATGGAAGATAAAACCTTTTTACTCTTGCTTATGG
CATCATCCACCCCATGAAGCTTGTTACGAGAATTTAACAGAGTTTCACGC
TGTTGATTCAGATCTTCCACAATTGAGATACCAAGCTCCTCTGTCTCTAG
CATGACTCTTCTACTCTCCCTAATTCTTTCACCCGACTGATTTATTCTCT
CAACTGACATGGCCAATCTTTCTCTCTGCTCCCCAGAAACCACATTTGGA
TCGGCTTTTCCAGACTCCAGCAACTCTTCGTGAGCTTCGGATGACGAAAC
TCTTTTAAACTCTCTCTTCAACTTATTCAAATCTGACTTGTATTCTCTTA
ATTTAGCAAGCAGCATAGCCTTTACATTCGGCTGCAAACTTCTTG
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