DN621096

Overview
NameDN621096
Unique NameDN621096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621096 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 3 
Query:  204 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE-----EXSREYAEFLHIPRKRFTDFA 506
            M+ LI ++NK+Q     LG              LP I             LE+IVG+DFLPRGSGIVTRRPL+LQL  L        ++E+ EFLH P   F DF+
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPL---------DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFS 97
[Close]
BLAST of DN621096 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 3 
Query:  210 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL------------------HKLEEXSREYAEFLHIPRKRFTDF 503
            +LI +VN++Q A + +G       +  L D LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                   K +  S E+ EFLH+P ++F +F
Sbjct:    4 SLIKVVNQLQEAFSTVG-------VQNLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEF 111
The following BLAST results are available for this feature:
BLAST of DN621096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DYNA_DICDI3.900e-1241.51Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
VPS1_SCHPO7.354e-1138.79Vacuolar protein sorting-associated protein 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06D21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621096 ID=DN621096; Name=DN621096; organism=Citrus sinensis; type=EST; length=506bp
CTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTGTCC
TACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACGTCGCCGT
TTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGAT
CATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTGCGAGAG
AAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTAC
GGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACT
CTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCA
GTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTAT
CGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAANGCA
GCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGAT
TTTGCT
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