CX047077

Overview
NameCX047077
Unique NameCX047077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.919e-23
Identity = 63/132 (47.73%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  504 TNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 848
            TNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  191 TNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.393e-17
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = -2
Query:  495 VAAEDXIXXXXXXXXXVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 899
            V  ED +         V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  124 VEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.963e-17
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  498 VAAEDXIXXXXXXXXXVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 899
            +  ED +         V NW  V M       +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  124 IEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 56/134 (41.79%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  498 VAAEDXIXXXXXXXXXVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 899
            +  ED +         V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  124 IEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  495 EDXIXXXXXXXXXVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 890
            +D I         V NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  131 DDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 55/136 (40.44%), Postives = 71/136 (52.21%), Query Frame = -2
Query:  492 VAAEDXIXXXXXXXXXVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 899
            V  ED +         V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  123 VEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.517e-15
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = -2
Query:  492 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 845
            NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  152 NWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -2
Query:  492 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 803
            +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  153 VDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  498 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 803
            +DP  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  164 VDPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CX047077 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  498 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 803
            +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  163 VDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
The following BLAST results are available for this feature:
BLAST of CX047077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_YEAST2.919e-2347.73Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRFU2.393e-1741.48Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO6.963e-1741.04Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.188e-1641.79Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE1.188e-1639.39Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRKO2.646e-1640.44Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALWD6.517e-1534.75Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRAR8.512e-1538.46Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULTO3.234e-1437.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULAC4.224e-1439.22Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A04-A7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047077 ID=CX047077; Name=CX047077; organism=Citrus sinensis; type=EST; length=900bp
TTTTTAGCAACAAAAACAGAGTAAGCTCAGATCTTCATCATTGATCTTAA
TCACATCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAAACATACAA
AGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAATACAGATA
ACAAGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCACAACG
GTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGATGGAC
CGGAAACAAACACTTTATTCACAAAACCTCACAACATCATCTCATTATTC
GCATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGA
GTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTATCAA
ATTAACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCA
GGGTGAACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAG
TGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTC
CAAATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTCCATG
CCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGC
ATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAA
TCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCA
TCATGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGATC
CATGCAAGACTGTGTATCGTGATTCATTGACACCAACGCCCAGTTGGTCA
CCACACCACCAACTCTGCCGCCTTTGACTATCANGTCCTCGGCTGCCACT
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