DN617890

Overview
NameDN617890
Unique NameDN617890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:577..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 486
            LPF  +GSG  AA+A+ E +++  +T +    L+V+A+  GI  DLGSG NVD CVITK   + LR    P      + + +  P  T VL   + PL   +E+VE
Sbjct:  161 LPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPL--TLELVE 264          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  283 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNH 480
            F ++GSGSL A+A  ES+Y+  + KDE I L  DA+  GI NDL SGSN+DVCVI     E+LRN+
Sbjct:  130 FVSLGSGSLGAIATLESRYR-AMDKDEAIDLACDAVKAGILNDLYSGSNIDVCVIDYSGVEFLRNY 194          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -3
Query:  193 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLTKITPL 486
            LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI  GI +DLGSG NVD CVIT G  +  R   L  P   V   G Y F P  T VL  ++ PL
Sbjct:  161 LPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR--ALSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 258          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSF-PKKTEVLLTKITPLRERVEVVE 486
            LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI  GI  DLGSG NVD CVIT    + LR    P  +    +  Y F P  T VL   + PL   +E+VE
Sbjct:  161 LPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKMLRALSSPT-KPIERSSQYRFAPGTTPVLSQTVVPL--TLELVE 264          
The following BLAST results are available for this feature:
BLAST of DN617890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB10_HUMAN2.687e-1238.68Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSB7_ENCCU3.510e-1254.55Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB10_MOUSE4.584e-1243.00Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN1.334e-1140.19Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617890 ID=DN617890; Name=DN617890; organism=Citrus sinensis; type=EST; length=488bp
CACAAAGCTAAATAACATAATCCACAAGTAGTCATGTGCGAACCCAATTC
CGGAAAATGTAAAATTTTAAAAAATATCATTCCAGTTTCTAAACCAGGAA
TTGTAAACTATACTCTGATTTCAGCCTTGTGCTCTTCTGATCTTTCACTC
TTCCATTGCATCTCCTCCCTCAACCACTTCCACCCTTTCCCTCAGCGGGG
TGATCTTCGTCAAGAGGACCTCTGTCTTCTTAGGGAAAGAATAGCCTTTG
GCATTGACAAAGGTGCGAGGATTTGGCAAAAGGTGGTTCCTCAGGTACTC
TTTGTGCCCCTTGGTAATTACACAGACATCAACATTGCTTCCACTTCCCA
AGTCATTGAATATACCAAAGCAAATGGCGTCCACAACTAGCTGTATTCCC
TCATCTTTAGTCAGGCCTTCTTTGTATTTTGATTCAAACATAGCCATGGC
AGCAAGAGAACCAGAACCCATTGTCGCAAATGGTAAAG
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