DN617454

Overview
NameDN617454
Unique NameDN617454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++      DK  + +E + + + I N++ACEG +RVERHE L +W +RF  +GF P  L    +NA +       L +    YRVEEN+G L LGW  R + T+SAWK
Sbjct:  469 LFDSLEGVPSSQDK--VMSEVY-LGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLG---SNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAWK 574          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKD--YDSNYRVEENDGALYLGWRNRAMATSSAW 579
            +F+  D T PRD+K+RI  E+    R+ +N+IACE  +RVER E   +W+ R + AGF    + P +    R  LK   Y  ++ V+EN   L  GW+ R +  SS W
Sbjct:  520 LFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCW 627          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++    +D   R+ +E   + R I+N++ACEG +RVERHE L +WR+RF + GF P  +          +L  Y     Y VEEN+G L LGW+ R +  +SAW+
Sbjct:  402 LFDSLEGPPSQD---RVMSELF-LGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWR 506          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  259 RPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 555
            +P  + Q +   +  + R I N++ACEG +RVERHE L +WR R   +GF P  L          +L  +     YRVEENDG L LGW  R +  +SAWK
Sbjct:  474 QPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWK 574          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYD--SNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++      DK  + +E + + + I N++ACEG +RVERHE L +W +RF  +GF P  L          +L  ++    YRVEEN+G L L W  R + T+SAWK
Sbjct:  463 LFDSLEGAPSSQDK--VMSEVY-LGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAWK 568          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = -3
Query:  259 VARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 510
            + R I N++ACEG ER ERHE LG+WRSR   +GF P  L          +L  +     YRVEE DG L LGW  R +  +SAW+
Sbjct:  538 LGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAWR 623          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRL-SPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAW 579
            +F+  D    R+D+ R+  E+    R+IVN++ACEG ERVER E   +W++R + AGF    L   L+ N    +   YD N+ V++N   L  GW+ R +  SS W
Sbjct:  658 VFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLW 764          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.933e-14
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  250 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK*KT 579
            +F+S++      DK  + +E + + + I N++ACEG +RVERHE L +W +RF  +G  P  L          +L  ++S   YRVEE++G L LGW  R + T+SAWK  T
Sbjct:  476 LFDSLEGVPNSQDK--VMSEVY-LGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLST 584          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = -3
Query:  259 VARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 510
            + R I N++ACEG ER ERHE LG+WR+R   AGF P  L          +L  +     YRVEE +G L LGW  R +  +SAW+
Sbjct:  536 LGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAWR 621          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++ +    DK      +  + + I N++ACEG +RVE HE L +WR+R   +GF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  472 LFDSLESSPNNQDKMM---SEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWK 577          
The following BLAST results are available for this feature:
BLAST of DN617454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RGA2_BRACM3.895e-1540.18DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL34_ARATH8.677e-1537.96Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
RGL1_ARATH8.677e-1538.53DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
GAI_SOLLC8.677e-1540.59DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
RGA1_BRACM1.133e-1438.53DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
DWRF8_MAIZE1.133e-1445.35DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SCL14_ARATH1.480e-1437.38Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
RGA_ARATH1.933e-1438.39DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
SLR1_ORYSJ2.525e-1444.19DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
GAIPB_CUCMA4.306e-1437.61DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617454 ID=DN617454; Name=DN617454; organism=Citrus sinensis; type=EST; length=581bp
AAATTTTTTTTCCTTCATTTAGTAACCAAGAAACACAAACGTTATAACAC
CGTAAGTTCAGTAAAATTCAGACCTGTCTGCTTATCATATTACAACGTGG
ACATTTACAGTAAAGTTGAGGTTCTATTAGATGATAATTGACAGCTACTC
TCCGTTCTATTAAGTTACAACTAACAAATATCACTATGACTCGTGCTCTA
AAAGCTACAACAAAAACTGTGGGGGTTAATTATACAGAGTTTCTATAATG
GTTTTTCACTTCCATGCAGAAGAGGTGGCCATAGCTCTGTTTCTCCAGCC
GAGATAAAGAGCCCCATCATTCTCTTCAACTCTATAGTTACTATCATAGT
CTTTCAATACATCCCTCACAGCATTTGTCACCAAAGGACTCAATCGATAT
GGGGTAAATCCTGCCATCATAAAACGTGATCTCCACTTACCAAGAAGTTC
ATGCCGTTCCACCCTTTCAATCCCCTCACAAGCTATCATGTTGACTATGT
CCCGGGCCACACAGTGCTGCTCTGCACTGATACGTTGCTTGTCATCCCTT
GGACGAGTAACATCAATGCTCTCAAACATAG
back to top