DN617454

Overview
NameDN617454
Unique NameDN617454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  259 MFESIDV--TRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++     P + + ++ +E + + + I N++ACEG ERVERHE L +WR+R   AGF P  L          +L  +     YRVEEN+G L LGW  R +  +SAW+
Sbjct:  466 LFDSLEGCGVSPVNTQDKLMSEVY-LGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ 575          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = -3
Query:  250 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK*KT 579
            +F+S++      DK  + +E + + + I N++AC+G +RVERHE L +WR+RF  AGF    +    +NA +       L +    YRVEE+DG L LGW  R +  +SAWK  T
Sbjct:  424 LFDSLEGVPSGQDK--VMSEVY-LGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIG---SNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKLST 532          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRL--SPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++       + R+ +E + + R I+N++A EG +R+ERHE L +WR R   AGF P  L        ++   L      YRVEENDG+L L W+ + +  +SAWK
Sbjct:  409 LFDSLEDGVVIPSQDRVMSEVY-LGRQILNLVATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENDGSLMLAWQTKPLIAASAWK 516          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = -3
Query:  259 VARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 510
            + R I N++ACEG ER ERHE LG+WR+R   AGF    L          +L  +     Y+VEE +G L LGW  R +  +SAW+
Sbjct:  529 LGRQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 614          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKD-YDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+  + T   DD  R   E+  + RD +++IACEG ER  R E   +W+ R + AGF P +LS  +    ++++K+ Y  ++ ++ ++  ++ GW+ R +   S WK
Sbjct:  472 LFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 579          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = -3
Query:  259 VARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 510
            + R I N++ACEG ER ERHE LG+WR+R   AGF    L          +L  +     Y+VEE +G L LGW  R +  +SAW+
Sbjct:  534 LGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 619          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYD-SNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+ ++   PR  + RI  E+     +I N+I+CEG ER ERHE L KW  R  +AGF    LS       R +L+      YR++E  G   + W++R + + SAW+
Sbjct:  372 LFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAWR 479          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  280 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAM 579
            +F+S++ +      Q ++  +  + R I N++ACEG++RVERHE L +WR+R   AG +P  L          +L  + S   YRVEEN+G L LGW  R +
Sbjct:  425 LFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPL 526          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSP-LVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+ ++   PR+D++R+  E     R+ +N+IACEG ERVER E   +W  R M +G       P ++  ++  V   Y  ++ +++++  L  GW+ R +   S WK
Sbjct:  606 IFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 713          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEEND-----GALYLGWRNRAMATSSAW 579
            +F+  D    R+D  R+  E+    R+I+N++ACEG ERVER E   +W++R M AGF   R  PL    V+ +    +S Y+ +E D       L  GW+ R +  SS W
Sbjct:  584 LFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGF---RQIPLEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIW 691          
The following BLAST results are available for this feature:
BLAST of DN617454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GAI1_VITVI4.306e-1437.84DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
GAI_ARATH5.624e-1438.26DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
RGL3_ARATH1.253e-1336.70DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
SLN1_HORVU6.218e-1341.86DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
SCL30_ARATH6.218e-1330.56Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
RHT1_WHEAT6.218e-1341.86DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
SCL3_ARATH8.121e-1335.19Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
GAI_GOSHI1.385e-1237.25DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
SCL9_ARATH1.532e-1130.56Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL33_ARATH2.612e-1136.04Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617454 ID=DN617454; Name=DN617454; organism=Citrus sinensis; type=EST; length=581bp
AAATTTTTTTTCCTTCATTTAGTAACCAAGAAACACAAACGTTATAACAC
CGTAAGTTCAGTAAAATTCAGACCTGTCTGCTTATCATATTACAACGTGG
ACATTTACAGTAAAGTTGAGGTTCTATTAGATGATAATTGACAGCTACTC
TCCGTTCTATTAAGTTACAACTAACAAATATCACTATGACTCGTGCTCTA
AAAGCTACAACAAAAACTGTGGGGGTTAATTATACAGAGTTTCTATAATG
GTTTTTCACTTCCATGCAGAAGAGGTGGCCATAGCTCTGTTTCTCCAGCC
GAGATAAAGAGCCCCATCATTCTCTTCAACTCTATAGTTACTATCATAGT
CTTTCAATACATCCCTCACAGCATTTGTCACCAAAGGACTCAATCGATAT
GGGGTAAATCCTGCCATCATAAAACGTGATCTCCACTTACCAAGAAGTTC
ATGCCGTTCCACCCTTTCAATCCCCTCACAAGCTATCATGTTGACTATGT
CCCGGGCCACACAGTGCTGCTCTGCACTGATACGTTGCTTGTCATCCCTT
GGACGAGTAACATCAATGCTCTCAAACATAG
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