DN617454

Overview
NameDN617454
Unique NameDN617454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 32/108 (29.63%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLK--DYDSNYRVEENDGALYLGWRNRAMATSSAW 579
            +F+    T  +++ +RI  E     R+++N+IACEG++RVER E   +W+ R + AGF    +   +    R+ +K   Y  ++ ++E+      GW+ R + +SS W
Sbjct:  552 LFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCW 659
[Close]
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 33/110 (30.00%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:  259 MFESIDVTRPRDD--KQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVL-KDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+  D T   +D  K R   E+  + RD +++I+CEG ER  R E   +WR R + AGF P  +S  +    ++++ K Y  ++ ++ ++  +  GW+ R +   S WK
Sbjct:  489 LFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 598
The following BLAST results are available for this feature:
BLAST of DN617454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SCL31_ARATH5.820e-1129.63Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL11_ARATH7.601e-1130.00Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617454 ID=DN617454; Name=DN617454; organism=Citrus sinensis; type=EST; length=581bp
AAATTTTTTTTCCTTCATTTAGTAACCAAGAAACACAAACGTTATAACAC
CGTAAGTTCAGTAAAATTCAGACCTGTCTGCTTATCATATTACAACGTGG
ACATTTACAGTAAAGTTGAGGTTCTATTAGATGATAATTGACAGCTACTC
TCCGTTCTATTAAGTTACAACTAACAAATATCACTATGACTCGTGCTCTA
AAAGCTACAACAAAAACTGTGGGGGTTAATTATACAGAGTTTCTATAATG
GTTTTTCACTTCCATGCAGAAGAGGTGGCCATAGCTCTGTTTCTCCAGCC
GAGATAAAGAGCCCCATCATTCTCTTCAACTCTATAGTTACTATCATAGT
CTTTCAATACATCCCTCACAGCATTTGTCACCAAAGGACTCAATCGATAT
GGGGTAAATCCTGCCATCATAAAACGTGATCTCCACTTACCAAGAAGTTC
ATGCCGTTCCACCCTTTCAATCCCCTCACAAGCTATCATGTTGACTATGT
CCCGGGCCACACAGTGCTGCTCTGCACTGATACGTTGCTTGTCATCCCTT
GGACGAGTAACATCAATGCTCTCAAACATAG
back to top