DN617414

Overview
NameDN617414
Unique NameDN617414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.085e-26
Identity = 66/199 (33.17%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGL---AYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQ-SKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C P RPAF G AP  L D LNQ  RWA+G +E+ FSR+ P+ +G +   L  L   AYA+ + +P  SIP++ Y  LP + L +   I P IS                   L+    G +  +WW +++ W+I G+S HLF  ++ LLK L      F VTSK  DD+   ++Y+ +     +P    + + +  +V
Sbjct:  742 YCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLWYGYKGGKLKWLERFAYANTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDDDFGELYAFKWTTLLIPPTTVLIINIVGVV 940          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.850e-26
Identity = 64/169 (37.87%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI--RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501
            +CNP RPAF G AP  L D LNQ  RWA+G +E+  SR+CPI +G   R   L  +AY +   +PI SIP++ Y  LP   L +   I P+IS                   L+    G +   WW +++ W+I G S HLF   + LLK L      F VTSK  D++
Sbjct:  796 YCNPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYHGRLRLLERIAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDED 964          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 65/201 (32.34%), Postives = 101/201 (50.25%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGL---AYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVV---DDEQSKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C P R AF G AP  L D LNQ  RWA+G +E+ FSR+ P+ +G +   L  L   +Y + + +P  S+P++ Y  LP + L +G  I P IS                   L+    G +  +WW +++ W+I G+S HLF  ++ LLK L      F VTSK     DDE +++Y+ +     +P    + L +  +V
Sbjct:  769 YCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVV 969          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 65/201 (32.34%), Postives = 101/201 (50.25%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGL---AYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVV---DDEQSKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C P R AF G AP  L D LNQ  RWA+G +E+ FSR+ P+ +G +   L  L   +Y + + +P  S+P++ Y  LP + L +G  I P IS                   L+    G +  +WW +++ W+I G+S HLF  ++ LLK L      F VTSK     DDE +++Y+ +     +P    + L +  +V
Sbjct:  769 YCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATGDEDDEFAELYAFKWTTLLIPPTTLLILNIIGVV 969          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 62/169 (36.69%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI--RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501
            +C P  PAF G AP  L D LNQ  RWA+G +E+ FSR+CPI +G   R   L   AY + + +PI SIP+++Y  LP + L +   I P+IS                   L+    G    +WW +++ W+I G+S HLF   + +LK L      F VTSK  D++
Sbjct:  781 YCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDED 949          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI--RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501
            +C P RP F G AP  L D LNQ  RWA+G +E+  SR+CPI +G   R   L  LAY +   +PI SIP++ Y  LP + L +   I P+IS                   L+    G     WW +++ W+I G S HLF   + LLK L      F VTSK  D++
Sbjct:  791 YCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 959          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.772e-25
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI--RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501
            +C P RP F G AP  L D LNQ  RWA+G +E+  SR+CPI +G   R   L  LAY +   +PI SIP++ Y  LP + L +   I P+IS                   L+    G     WW +++ W+I G S HLF   + LLK L      F VTSK  D++
Sbjct:  791 YCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 959          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI--RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLK-FLGISAFGFNVTSKVVDDEQ--SKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C P RPAF G AP  L D LNQ  RWA+G +E+  SR+CPI +G   R   L  +AY +   +PI SIP++ Y  LP   L +   I P+IS                   L+          WW +++ W+I G S HLF   + LLK F GI    F VTSK  D++   +++Y  +     +P    + + +  IV
Sbjct:  783 YCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSDVALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDT-NFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIV 981          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI---RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVKLF 594
            +C P RPAF G AP  L D L+Q  RWA+G +E+  SR+CP+ +G    R   L  L+Y +   +P  S+P++ Y  LP + L +G  I P +S                   L+    G     WW +++ W+I G+S HLF   + +LK +      F VT+K  DD E  ++Y  +     +P    + L +  +V  F
Sbjct:  704 YCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGF 905          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGI---RTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVKLF 594
            +C P RPAF G AP  L D L+Q  RWA+G +E+  SR+CP+ +G    R   L  L+Y +   +P  S+P++ Y  LP + L +G  I P +S                   L+    G     WW +++ W+I G+S HLF   + +LK +      F VT+K  DD E  ++Y  +     +P    + L +  +V  F
Sbjct:  704 YCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGF 905          
The following BLAST results are available for this feature:
BLAST of DN617414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CESA7_ARATH1.085e-2633.17Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ARATH1.850e-2637.87Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA9_ORYSJ1.566e-2532.34Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.566e-2532.34Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA3_ARATH1.566e-2536.69Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA1_ORYSJ7.772e-2537.28Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI7.772e-2537.28Probable cellulose synthase A catalytic subunit 1 ... [more]
CESAA_ARATH1.015e-2434.00Probable cellulose synthase A catalytic subunit 10... [more]
CESA4_ORYSJ2.261e-2431.19Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI2.261e-2431.19Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617414 ID=DN617414; Name=DN617414; organism=Citrus sinensis; type=EST; length=604bp
TTTTGCAATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCT
CGTTGATTTGCTAAATCAACACAAGCGATGGGCCATTGGCCTCCTTGAGG
TGGCCTTTTCCAGATACTGTCCCATAACCTTCGGGATCCGAACCATGGGC
TTAACGGGCCTAGCTTATGCTCATTATTCATTCTGGCCTATTTGGTCTAT
TCCAATAATGCTATATGCATTCCTCCCCCAGCTAGCTCTCGCCAGTGGAA
TCAGCATCTTCCCAAAGATTTCGGAACCAGGGTTTCTCCTGTACTTATTT
CTTTTCCTTGGAGCTTATGGACAAGATTGTCTAGATTTCCTATTGGAAGG
AGGTACATTTCGAAAATGGTGGAATGATCAGAGAATATGGCTAATAAGGG
GGCTTTCTTGTCACCTTTTTGGAACACTTGAGTACTTACTCAAGTTCTTG
GGAATTTCTGCATTTGGATTCAATGTGACCAGCAAAGTCGTTGATGATGA
ACAAAGCAAAATATATAGCCAAGAGATGCTTGATTTTGGAGTGCCATCGC
CTATGTTTGTGACACTGGCAGTGGCAGCAATAGTTAAACTTTTTCTCATT
TTCT
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