DN617414

Overview
NameDN617414
Unique NameDN617414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2703 contig Csv1_Contig2703:595..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.050e-17
Identity = 53/173 (30.64%), Postives = 80/173 (46.24%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYS 519
            +C   R AF G AP  L D L+Q  RWA G +E+ FS+   +    R   L  +AY +   +P  SI +++Y FLP L L SG  I   +                    L+    G    +WW +++ WLI G S HL   ++ LLK +      F +TSK   +++  I++
Sbjct:  757 YCITKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAMFATRRLKFLQRVAYLNVGIYPFTSIFLVVYCFLPALCLFSGKFIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRNEQFWLIGGTSAHLAAVVQGLLKVIAGIEISFTLTSKASGEDEDDIFA 929          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 55/199 (27.64%), Postives = 89/199 (44.72%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVV----DDEQSKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C   R AF G AP  L D L+Q  RWA G +E+ FS+   +    R   L  +AY +   +P  S+ +++Y  LP L+L SG  I   +                    L+    G    +WW +++ W+I G S HL   L+ LLK +      F +T+K      DD  +++Y  +     +P    + + + A+V
Sbjct:  733 YCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALV 931          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 55/199 (27.64%), Postives = 89/199 (44.72%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVV----DDEQSKIYSQEMLDFGVPSPMFVTLAVAAIV 585
            +C   R AF G AP  L D L+Q  RWA G +E+ FS+   +    R   L  +AY +   +P  S+ +++Y  LP L+L SG  I   +                    L+    G    +WW +++ W+I G S HL   L+ LLK +      F +T+K      DD  +++Y  +     +P    + + + A+V
Sbjct:  733 YCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALV 931          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 59/199 (29.65%), Postives = 88/199 (44.22%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVV-----DDEQSKIYSQEMLDFGVPSPMFVTLAVAAI 582
            +C   R AF G AP  L D L+Q  RWA G +E+ FSR   I    R   L  +AY +   +P  S+ +++Y  LP ++L SG  I   +                    L+    G T  +WW +++ W+I G S H    L+ LLK +      F +TSK       DDE + +Y  +     VP    + + + AI
Sbjct:  900 YCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPPLTIMMVNMIAI 1098          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 57/173 (32.95%), Postives = 82/173 (47.40%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCP-ITFGIRTMGLTGLAYAHYSFWP---IWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQS 507
            F +PD PAF G  P+   + + QH+RWA G +EV F++  P I F  +      LAY    FW    I SIP ++Y  LP   L +  ++FPK   P                   F++ G + + W+  Q +W I   S  LF   + +LK LGIS  GF V  K + + +S
Sbjct:  476 FISPDPPAFLGSTPSVGPEAIVQHRRWATGSIEVLFNKQSPLIGFRRKIKFRQRLAY----FWVLMCIRSIPELVYCLLPAYCLLNNSALFPK--GPCLGIIVTLVGMHCLYTLWQFMILGFSVKSWYVSQSLWRIIATSSWLFSIQDIILKLLGISKIGFIVAKKNMPETRS 642          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 51/159 (32.08%), Postives = 74/159 (46.54%), Query Frame = 1
Query:   10 PDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSK 486
            P R AF G AP  L D L+Q  RWA G +E+ FSR   +    R   L  +AY +   +P  S+ ++ Y  LP ++L SG  I  ++S                   L+    G T  +WW +++ W+I G S H    L+ LLK +      F +TSK
Sbjct:  925 PRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFASPRMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSK 1083          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 54/174 (31.03%), Postives = 79/174 (45.40%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIW---SIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQS 507
            F +PD PAF G  PT  ++ + Q +RWA G +EV F++  P    F  +      LAY    FW +    SIP ++Y  LP   L    ++FPK   P                   F+  G + + W+  Q +W I   S  LF   + +LK LGIS  GF +  K + + +S
Sbjct:  476 FISPDPPAFIGSTPTLGLEAIVQQRRWATGAIEVLFNKQSPFMGMFHGKIKFRQRLAY----FWALMCLRSIPELIYCLLPAYCLLHDSALFPK--GPCLCTIVTLVGMHCLYSLWQFMSLGFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKS 643          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 53/175 (30.29%), Postives = 77/175 (44.00%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQS 507
            + +P  PAF G  P    + + Q +RWA GLLEV F++  P+   F  +      LAY +   W + SIP ++Y  LP   L    ++FPK                    CL    +F+  G + + W+  Q  W I+     LF   + +LK LGIS   F VT K +    S
Sbjct:  477 YISPKPPAFLGAMPPGGPEAMLQQRRWATGLLEVLFNKQSPLIGMFCRKIRFRQSLAYLYIFTWGLRSIPELIYCLLPAYCLLHNAALFPK------GVYLGIVVTLVGMHCLYSLWEFMSLGFSVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMS 645          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 53/172 (30.81%), Postives = 78/172 (45.35%), Query Frame = 1
Query:   10 PDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQS 507
            PD PAF G  P    +++ Q +RWA GLLE+ F++  P+   F  +      LAY +   W + SIP + Y  LP   L    ++FPK                    CL    +F+  G + + W+  Q    I+     LF  L+ +LK LGIS   F VT K + + +S
Sbjct:  480 PDPPAFLGCMPQGGPEVMVQQRRWATGLLEILFNKQSPLIGMFCRKIRFRQSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALFPK------GVYLGIIITLVGIHCLYTLWEFMNLGFSIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKS 645          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 48/194 (24.74%), Postives = 85/194 (43.81%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAI 582
            +C  +  AF G AP  L + L Q  RW+ G LE+ FS  CP+  G R   +  +AY + + +P+ S+ ++ Y   P + +  GI    K                     ++    G T   W  +++ ++I   + +    L  +LK  G+    F +T+K V    S+ ++ E+ D      +F T+ V A+
Sbjct:  593 YCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAGRRLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFA-ELYDVQWAPLLFPTIVVIAV 785          
The following BLAST results are available for this feature:
BLAST of DN617414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CSLD1_ARATH2.050e-1730.64Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD5_ORYSJ4.567e-1727.64Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI4.567e-1727.64Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD5_ARATH1.736e-1629.65Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLB6_ARATH2.267e-1632.95Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLD4_ORYSJ3.866e-1632.08Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLB5_ARATH3.273e-1531.03Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLB3_ARATH6.173e-1430.29Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB4_ARATH1.796e-1330.81Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLF8_ORYSJ8.913e-1324.74Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617414 ID=DN617414; Name=DN617414; organism=Citrus sinensis; type=EST; length=604bp
TTTTGCAATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCT
CGTTGATTTGCTAAATCAACACAAGCGATGGGCCATTGGCCTCCTTGAGG
TGGCCTTTTCCAGATACTGTCCCATAACCTTCGGGATCCGAACCATGGGC
TTAACGGGCCTAGCTTATGCTCATTATTCATTCTGGCCTATTTGGTCTAT
TCCAATAATGCTATATGCATTCCTCCCCCAGCTAGCTCTCGCCAGTGGAA
TCAGCATCTTCCCAAAGATTTCGGAACCAGGGTTTCTCCTGTACTTATTT
CTTTTCCTTGGAGCTTATGGACAAGATTGTCTAGATTTCCTATTGGAAGG
AGGTACATTTCGAAAATGGTGGAATGATCAGAGAATATGGCTAATAAGGG
GGCTTTCTTGTCACCTTTTTGGAACACTTGAGTACTTACTCAAGTTCTTG
GGAATTTCTGCATTTGGATTCAATGTGACCAGCAAAGTCGTTGATGATGA
ACAAAGCAAAATATATAGCCAAGAGATGCTTGATTTTGGAGTGCCATCGC
CTATGTTTGTGACACTGGCAGTGGCAGCAATAGTTAAACTTTTTCTCATT
TTCT
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