DN617414

Overview
NameDN617414
Unique NameDN617414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2703 contig Csv1_Contig2703:595..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 55/158 (34.81%), Postives = 69/158 (43.67%), Query Frame = 1
Query:   19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI-TFGIRTMGLTG-LAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSK 486
            PAF G AP      L Q KRWA G LE+  SR  PI T   +++     LAY H   WP+ +   + YA L    L S  S  PK SE                  ++F+  G + R  WN+ R+  I   S  L   L  +LK LG S   F VT K
Sbjct:  481 PAFMGCAPNGGPACLTQLKRWASGFLEILISRNNPILTTTFKSLQFRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRK 638          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 57/194 (29.38%), Postives = 84/194 (43.30%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYS--QEMLDFGVPSPMF 558
            + +PD PAF G  P  + + L Q +RWA G +E+ F++  P+   F  +      LAY       + SIP ++Y  LP   L    ++FPK                    CL    +F+  G + + W   Q +W I   S  LF   +  LK LGIS   F +T K V   +S + S   +  D G  S +F
Sbjct:  478 YISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLRGLFSKKIRFRQRLAYL-CIITCLRSIPELIYCLLPAYCLLHNSTLFPK------GLYLGITVTLVGIHCLYTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLF 664          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 1
Query:   19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVT--SKVVDDEQSKIYSQEMLDFGVPS-PMFVTLAVAAIVKLFLI 600
            PAF G AP      L Q KRWA G  E+  SR  PI  T   R      LAY     WP+ +   + Y  L    + +  S  PK SE                + ++++  G + R WWN+ R+  I  +S      L  LLK LG+S   F VT   K + D+       +   F   S P+F+ +   A++ +  +
Sbjct:  492 PAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAV 690          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 1
Query:   19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVT--SKVVDDEQSKIYSQEMLDFGVPS-PMFVTLAVAAIVKLFLI 600
            PAF G AP      L Q KRWA G  E+  SR  PI  T   R      LAY     WP+ +   + Y  L    + +  S  PK SE                + ++++  G + R WWN+ R+  I  +S      L  LLK LG+S   F VT   K + D+       +   F   S P+F+ +   A++ +  +
Sbjct:  492 PAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAV 690          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1
Query:    1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALA-SGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLK-FLGISAFGFNVTSK 486
            +C  +  AF G AP  L + L Q  RW+ G LE+ FSR CP+  G R   +  +AYA+ + +P+ ++ +++Y  LP + L+  G     K                     ++    G T   WW +++ ++I     +L   L  +LK  LG+    F +T+K
Sbjct:  581 YCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGCRLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAK 744          
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 50/170 (29.41%), Postives = 75/170 (44.12%), Query Frame = 1
Query:   10 PDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501
            PD PAF G  P   ++ + Q +RWA G +EV F++  P+   F  +      +AY   S   + SIP ++Y  LP   L    ++FPK                    CL    +F+  G + + W+  Q  W I   S  LF   + +LK LG+S   F V+ K +  E
Sbjct:  480 PDPPAFLGSMPPGGLEAMIQQRRWATGSIEVLFNKQSPLLGLFCRKLRFRQRVAYLCVSIC-VRSIPELIYCLLPAYCLLHNSALFPK------GLCLGITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVE 642          
The following BLAST results are available for this feature:
BLAST of DN617414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CSLH1_ORYSJ1.986e-1234.81Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB1_ARATH3.387e-1229.38Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH2_ORYSJ9.855e-1228.64Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI9.855e-1228.64Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLF9_ORYSJ2.867e-1127.44Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLB2_ARATH2.867e-1129.41Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617414 ID=DN617414; Name=DN617414; organism=Citrus sinensis; type=EST; length=604bp
TTTTGCAATCCTGATAGGCCAGCATTTTATGGTGACGCCCCAACAACTCT
CGTTGATTTGCTAAATCAACACAAGCGATGGGCCATTGGCCTCCTTGAGG
TGGCCTTTTCCAGATACTGTCCCATAACCTTCGGGATCCGAACCATGGGC
TTAACGGGCCTAGCTTATGCTCATTATTCATTCTGGCCTATTTGGTCTAT
TCCAATAATGCTATATGCATTCCTCCCCCAGCTAGCTCTCGCCAGTGGAA
TCAGCATCTTCCCAAAGATTTCGGAACCAGGGTTTCTCCTGTACTTATTT
CTTTTCCTTGGAGCTTATGGACAAGATTGTCTAGATTTCCTATTGGAAGG
AGGTACATTTCGAAAATGGTGGAATGATCAGAGAATATGGCTAATAAGGG
GGCTTTCTTGTCACCTTTTTGGAACACTTGAGTACTTACTCAAGTTCTTG
GGAATTTCTGCATTTGGATTCAATGTGACCAGCAAAGTCGTTGATGATGA
ACAAAGCAAAATATATAGCCAAGAGATGCTTGATTTTGGAGTGCCATCGC
CTATGTTTGTGACACTGGCAGTGGCAGCAATAGTTAAACTTTTTCTCATT
TTCT
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