DN617414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12 Identity = 55/158 (34.81%), Postives = 69/158 (43.67%), Query Frame = 1 Query: 19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI-TFGIRTMGLTG-LAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSK 486 PAF G AP L Q KRWA G LE+ SR PI T +++ LAY H WP+ + + YA L L S S PK SE ++F+ G + R WN+ R+ I S L L +LK LG S F VT K Sbjct: 481 PAFMGCAPNGGPACLTQLKRWASGFLEILISRNNPILTTTFKSLQFRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRK 638
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12 Identity = 57/194 (29.38%), Postives = 84/194 (43.30%), Query Frame = 1 Query: 1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYS--QEMLDFGVPSPMF 558 + +PD PAF G P + + L Q +RWA G +E+ F++ P+ F + LAY + SIP ++Y LP L ++FPK CL +F+ G + + W Q +W I S LF + LK LGIS F +T K V +S + S + D G S +F Sbjct: 478 YISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLRGLFSKKIRFRQRLAYL-CIITCLRSIPELIYCLLPAYCLLHNSTLFPK------GLYLGITVTLVGIHCLYTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLF 664
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12 Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 1 Query: 19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVT--SKVVDDEQSKIYSQEMLDFGVPS-PMFVTLAVAAIVKLFLI 600 PAF G AP L Q KRWA G E+ SR PI T R LAY WP+ + + Y L + + S PK SE + ++++ G + R WWN+ R+ I +S L LLK LG+S F VT K + D+ + F S P+F+ + A++ + + Sbjct: 492 PAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAV 690
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12 Identity = 57/199 (28.64%), Postives = 83/199 (41.71%), Query Frame = 1 Query: 19 PAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVT--SKVVDDEQSKIYSQEMLDFGVPS-PMFVTLAVAAIVKLFLI 600 PAF G AP L Q KRWA G E+ SR PI T R LAY WP+ + + Y L + + S PK SE + ++++ G + R WWN+ R+ I +S L LLK LG+S F VT K + D+ + F S P+F+ + A++ + + Sbjct: 492 PAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAV 690
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11 Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1 Query: 1 FCNPDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPITFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALA-SGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLK-FLGISAFGFNVTSK 486 +C + AF G AP L + L Q RW+ G LE+ FSR CP+ G R + +AYA+ + +P+ ++ +++Y LP + L+ G K ++ G T WW +++ ++I +L L +LK LG+ F +T+K Sbjct: 581 YCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGCRLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAK 744
BLAST of DN617414 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11 Identity = 50/170 (29.41%), Postives = 75/170 (44.12%), Query Frame = 1 Query: 10 PDRPAFYGDAPTTLVDLLNQHKRWAIGLLEVAFSRYCPI--TFGIRTMGLTGLAYAHYSFWPIWSIPIMLYAFLPQLALASGISIFPKISEPXXXXXXXXXXXXXXQDCL----DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDE 501 PD PAF G P ++ + Q +RWA G +EV F++ P+ F + +AY S + SIP ++Y LP L ++FPK CL +F+ G + + W+ Q W I S LF + +LK LG+S F V+ K + E Sbjct: 480 PDPPAFLGSMPPGGLEAMIQQRRWATGSIEVLFNKQSPLLGLFCRKLRFRQRVAYLCVSIC-VRSIPELIYCLLPAYCLLHNSALFPK------GLCLGITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVE 642 The following BLAST results are available for this feature:
BLAST of DN617414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617414 ID=DN617414; Name=DN617414; organism=Citrus sinensis; type=EST; length=604bpback to top |