DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.300e-24
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = -2
Query:  171 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAI 485
            SGGEKQRVA+AR  LKAP I+L DEATSALD++ E  I  +L  +  NRT+I IAHRL+T +  D+I+V+++G +IE+G H+ LL++ G YA++W  Q    + +
Sbjct:  728 SGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLSTVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQGQETV 832          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.004e-24
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = -2
Query:  171 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAI 485
            SGGEKQRVA+AR  LKAP I+L DEATSALD++ E  I  +L  +  NRT+I +AHRL+T +  D+I+V+++G +IE+G H+ LL++ G YA++W  Q    + +
Sbjct:  728 SGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLSTVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQGQETV 832          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y1384_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1384 OS=Mycobacterium bovis GN=Mb1384 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 50/103 (48.54%), Postives = 75/103 (72.82%), Query Frame = -2
Query:  177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 485
            SGGE+QRV++ARA LKA P+LL DEATSALD+  EA +++AL +   +RT + +AHRL +    D ++ +++G+V+E GS  +LLT  GR++Q W QQ+  A+
Sbjct:  471 SGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELLTAGGRFSQFWRQQHEAAE 573          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y1349_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1349/MT1392 OS=Mycobacterium tuberculosis GN=Rv1349 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 50/103 (48.54%), Postives = 75/103 (72.82%), Query Frame = -2
Query:  177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 485
            SGGE+QRV++ARA LKA P+LL DEATSALD+  EA +++AL +   +RT + +AHRL +    D ++ +++G+V+E GS  +LLT  GR++Q W QQ+  A+
Sbjct:  471 SGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELLTAGGRFSQFWRQQHEAAE 573          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.740e-24
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I   L +L +NRTSI IAHRL+T    DEI+V++ GK++E+G+H +L+ +AG YA L+  Q
Sbjct:  500 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVERGNHSELIAQAGIYANLYQMQ 597          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIG1 (Lipid A export ATP-binding/permease protein msbA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=msbA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.740e-24
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  162 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAA 485
            SGG++QRVA+ARA LK  PILL DEATSALD+ +E  +  AL+ L  NRT I +AHRLTT    D IIV++ GK+IEQG+HD L+ + G Y  L         A+  A
Sbjct:  515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTVESADRIIVMDGGKIIEQGTHDQLMFQNGYYTMLRNISGKDTAAVQTA 622          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  156 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 485
            SGG++QRVA+ARA LK  PILL DEATSALD+ +E  +  AL+ L  NRT I +AHRLTT    D IIV+++GK+IEQG+H+ L+++ G Y  L    N      DAAV+
Sbjct:  515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNK-----DAAVR 619          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMA (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup A GN=msbA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  156 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 485
            SGG++QRVA+ARA LK  PILL DEATSALD+ +E  +  AL+ L  NRT I +AHRLTT    D IIV+++GK+IEQG+H+ L+++ G Y  L    N      DAAV+
Sbjct:  515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNK-----DAAVR 619          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PILL DEATSALD+ +E  +  AL  L  NRTSI IAHRL+T    D I+V+E G++IE GSH++LL   G YA+L+ +Q
Sbjct:  484 SGGQRQRLAIARAILKNAPILLLDEATSALDTESERHVQAALDELMQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLALDGHYAKLYRKQ 581          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_HAEDU (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus ducreyi GN=msbA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I +AL +L  N+T + IAHRL+T  + DEI+V++ GK++E+GSH+ LL K G Y QL+  Q
Sbjct:  482 SGGQRQRLAIARALLRNAPVLVLDEATSALDTESELAIQSALAALQKNKTVLVIAHRLSTIEKADEILVVDQGKIVERGSHEQLLAKGGAYKQLYSMQ 579          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB6_MOUSE2.300e-2450.48ATP-binding cassette sub-family B member 6, mitoch... [more]
ABCB6_RAT3.004e-2449.52ATP-binding cassette sub-family B member 6, mitoch... [more]
Y1384_MYCBO6.692e-2448.54Uncharacterized ABC transporter ATP-binding protei... [more]
Y1349_MYCTU6.692e-2448.54Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_SHEFN8.740e-2452.04Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIG18.740e-2451.85Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIMB1.141e-2352.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIMA1.141e-2352.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_METFK1.141e-2356.12Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAEDU1.141e-2352.04Lipid A export ATP-binding/permease protein msbA O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
back to top