DN617323
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.300e-24 Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = -2 Query: 171 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAI 485 SGGEKQRVA+AR LKAP I+L DEATSALD++ E I +L + NRT+I IAHRL+T + D+I+V+++G +IE+G H+ LL++ G YA++W Q + + Sbjct: 728 SGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLSTVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQGQETV 832
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.004e-24 Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = -2 Query: 171 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAI 485 SGGEKQRVA+AR LKAP I+L DEATSALD++ E I +L + NRT+I +AHRL+T + D+I+V+++G +IE+G H+ LL++ G YA++W Q + + Sbjct: 728 SGGEKQRVAIARTILKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLSTVVNADQILVIKDGCIIERGRHEALLSRGGVYAEMWQLQQQGQETV 832
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y1384_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1384 OS=Mycobacterium bovis GN=Mb1384 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24 Identity = 50/103 (48.54%), Postives = 75/103 (72.82%), Query Frame = -2 Query: 177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 485 SGGE+QRV++ARA LKA P+LL DEATSALD+ EA +++AL + +RT + +AHRL + D ++ +++G+V+E GS +LLT GR++Q W QQ+ A+ Sbjct: 471 SGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELLTAGGRFSQFWRQQHEAAE 573
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y1349_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1349/MT1392 OS=Mycobacterium tuberculosis GN=Rv1349 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24 Identity = 50/103 (48.54%), Postives = 75/103 (72.82%), Query Frame = -2 Query: 177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 485 SGGE+QRV++ARA LKA P+LL DEATSALD+ EA +++AL + +RT + +AHRL + D ++ +++G+V+E GS +LLT GR++Q W QQ+ A+ Sbjct: 471 SGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELLTAGGRFSQFWRQQHEAAE 573
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.740e-24 Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ P+L+ DEATSALD+ +E I L +L +NRTSI IAHRL+T DEI+V++ GK++E+G+H +L+ +AG YA L+ Q Sbjct: 500 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVERGNHSELIAQAGIYANLYQMQ 597
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIG1 (Lipid A export ATP-binding/permease protein msbA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=msbA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.740e-24 Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = -2 Query: 162 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAA 485 SGG++QRVA+ARA LK PILL DEATSALD+ +E + AL+ L NRT I +AHRLTT D IIV++ GK+IEQG+HD L+ + G Y L A+ A Sbjct: 515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTVESADRIIVMDGGKIIEQGTHDQLMFQNGYYTMLRNISGKDTAAVQTA 622
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = -2 Query: 156 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 485 SGG++QRVA+ARA LK PILL DEATSALD+ +E + AL+ L NRT I +AHRLTT D IIV+++GK+IEQG+H+ L+++ G Y L N DAAV+ Sbjct: 515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNK-----DAAVR 619
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMA (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup A GN=msbA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = -2 Query: 156 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 485 SGG++QRVA+ARA LK PILL DEATSALD+ +E + AL+ L NRT I +AHRLTT D IIV+++GK+IEQG+H+ L+++ G Y L N DAAV+ Sbjct: 515 SGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNK-----DAAVR 619
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23 Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA LK PILL DEATSALD+ +E + AL L NRTSI IAHRL+T D I+V+E G++IE GSH++LL G YA+L+ +Q Sbjct: 484 SGGQRQRLAIARAILKNAPILLLDEATSALDTESERHVQAALDELMQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLALDGHYAKLYRKQ 581
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_HAEDU (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus ducreyi GN=msbA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23 Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ P+L+ DEATSALD+ +E I +AL +L N+T + IAHRL+T + DEI+V++ GK++E+GSH+ LL K G Y QL+ Q Sbjct: 482 SGGQRQRLAIARALLRNAPVLVLDEATSALDTESELAIQSALAALQKNKTVLVIAHRLSTIEKADEILVVDQGKIVERGSHEQLLAKGGAYKQLYSMQ 579 The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bpback to top |