DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA +K  P+L+ DEATSALD+ +E ++  +L+ L   RT++ IAHRL+T    D IIVL+ GK++E G H +LL   G YA L+  Q
Sbjct:  522 SGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQ 619          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA +K  P+L+ DEATSALD+ +E ++  +L+ L   RT++ IAHRL+T    D IIVL+ GK++E G H +LL   G YA L+  Q
Sbjct:  522 SGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQ 619          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA +K  P+L+ DEATSALD+ +E ++  +L+ L   RT++ IAHRL+T    D IIVL+ GK++E G H +LL   G YA L+  Q
Sbjct:  522 SGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQ 619          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB26B_ARATH (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN----RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGG+KQR+A+ARA L+ P IL+ DEATSALD+ +E  +   L+S+ N+    R+ I IAHRL+T    D I+ +++G+V+E GSH +LL+K G YA+L  +QN+
Sbjct:  594 SGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLSKDGLYARLTKRQND 697          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFT (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msbA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL+ L   RT++ IAHRL+T    D+++V++ G++IE G+H DLL + G YA L+  Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLARDGLYAYLYSMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFA (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa GN=msbA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL+ L   RT++ IAHRL+T    D+++V++ G++IE G+H DLL + G YA L+  Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLARDGLYAYLYSMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BLOPB (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia pennsylvanicus (strain BPEN) GN=msbA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            S G++QR+A+ARA L+  PIL+ DEATSALDS +E  I  +L +L  NRTS+ IAHRL+T    DEI+V+ENG ++E+G H  L+ + G YAQL+  Q
Sbjct:  484 SSGQRQRIAIARALLRDCPILIFDEATSALDSASEHIIHKSLDTLKKNRTSLIIAHRLSTVENADEILVIENGYIMERGVHKVLIRRQGIYAQLYKLQ 581          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_AZOSE (Lipid A export ATP-binding/permease protein msbA OS=Azoarcus sp. (strain EbN1) GN=msbA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -2
Query:  171 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAI 485
            SGG++QR+A+ARA LK  PIL+ DEATSALD+ +E  I  AL  +   RT++ IAHRL+T  Q D I+V+++G+++E+GSH +LL   G YA+L   Q     A+
Sbjct:  493 SGGQRQRLAIARALLKNAPILILDEATSALDTESERHIQAALHRVMQARTTLVIAHRLSTIEQADVIMVMDHGRIVERGSHAELLAAGGHYARLHAMQFREEPAV 597          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_USTMA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ustilago maydis GN=ATM1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = -2
Query:  189 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS--LANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 485
            SGGEKQR+A+AR  LK P +L  DEATSALDS TE E++  + +  LA+ +T+IF+AHRL T    D IIVL+ G V EQG+HD L+   G Y  LW  Q+
Sbjct:  635 SGGEKQRLAVARLLLKNPSVLFFDEATSALDSYTETELMRNIHATLLADKKTAIFVAHRLRTISDSDFIIVLQGGGVKEQGTHDQLMDSKGLYWDLWQAQS 735          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_BRAJA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bradyrhizobium japonicum GN=ndvA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TE ++  AL  +   RT+  IAHRL T      I+V ENG+V E G+ D+L+ K G +A+L
Sbjct:  477 SGGERQRLSIARALLKDPPILILDEATSALDAVTEVKVNAALDEVMRGRTTFVIAHRLATIRNATRILVFENGRVTESGTFDELVAKGGHFAEL 570          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_BORPE1.068e-2148.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORPA1.068e-2148.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORBR1.068e-2148.98Lipid A export ATP-binding/permease protein msbA O... [more]
AB26B_ARATH1.068e-2149.04ABC transporter B family member 26, chloroplastic ... [more]
MSBA_XYLFT1.395e-2148.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XYLFA1.395e-2148.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BLOPB1.395e-2153.06Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_AZOSE1.395e-2148.57Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_USTMA1.395e-2153.47Iron-sulfur clusters transporter ATM1, mitochondri... [more]
NDVA_BRAJA1.822e-2152.13Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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