DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 48/94 (51.06%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA LK  P+L+ DEATSALD+ +E  I  AL  +   RT++ IAHRL+T  + D I+V++ G+++E+G+HDDLL + G YA+L
Sbjct:  494 SGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHDDLLAQNGYYARL 587          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_MANSM (Lipid A export ATP-binding/permease protein msbA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=msbA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I  AL+ L  +RT + IAHRL+T  + DEI+V+++G++ E+GSH++LL   G Y QL   Q N
Sbjct:  485 SGGQRQRLAIARALLRDSPVLILDEATSALDTESERAIQAALEELQKDRTVLVIAHRLSTIEKADEILVIDHGEICERGSHEELLALNGAYKQLHKMQFN 584          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_HAES1 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus somnus (strain 129Pt) GN=msbA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I  AL++L  +RT + IAHRL+T  + DEI+V+E G++ E+GSH +LL   G Y QL   Q N
Sbjct:  482 SGGQRQRLAIARALLRDSPVLILDEATSALDTESERAIQAALETLQKDRTVLVIAHRLSTIEKADEILVIEQGEIKERGSHQELLALNGAYKQLHSTQFN 581          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_ASPFU (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus fumigatus GN=atm1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN--RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGGEKQR+A++R  LK P +L  DEATSALD+ TE  +L  + S+     RTS+F+AHRL T    D+I+VL++G+V E GSH +LL   G YA+LW  Q
Sbjct:  594 SGGEKQRLAISRLILKDPELLFFDEATSALDTYTEQALLQNINSILKEKKRTSVFVAHRLRTIYDSDQILVLKDGRVAEMGSHRELLDLNGIYAELWNAQ 693          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: YWJA_BACSU (Uncharacterized ABC transporter ATP-binding protein ywjA OS=Bacillus subtilis GN=ywjA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+++AR FLK P IL+ DEATSALD+ TEA I  AL+ L+  RT++ IAHRL T    D I+V+ N  + EQG H DL+   G Y++L
Sbjct:  471 SGGQKQRLSIARMFLKNPSILILDEATSALDTETEAAIQKALQELSEGRTTLVIAHRLATIKDADRIVVVTNNGIEEQGRHQDLIEAGGLYSRL 564          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 46/98 (46.94%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL  L  +RT++ IAHRL+T    D+++V++ G+++E+G+H +LL + G Y+ L G Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XANOM (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 46/98 (46.94%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL  L  +RT++ IAHRL+T    D+++V++ G+++E+G+H +LL + G Y+ L G Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQGGLYSHLHGMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+++ARA LK  PIL+ DEATS+LD+  E E+  AL+ L   RT++ IAHRL+T    D I+VL  G+++E+G+H+ LL + G Y +L
Sbjct:  489 SGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLARRGEYYKL 582          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_POLSJ (Lipid A export ATP-binding/permease protein msbA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=msbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR+A+ARA  K  PIL+ DEATSALD+ +E  +  A+K L  +RTS+ IAHRL+T    D II++E G++IE G+H +LL + G YA L+
Sbjct:  488 SGGQRQRLAIARALYKNAPILVLDEATSALDTESELAVQEAIKRLTASRTSLVIAHRLSTVQHADRIIMMEAGRMIESGTHAELLARNGAYAHLY 582          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_METCA (Lipid A export ATP-binding/permease protein msbA OS=Methylococcus capsulatus GN=msbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEATSALD+ +E  +  AL+ L  NRT++ IAHRL+T    D+I V+  G++IE G+H  L+   G YA L+  Q
Sbjct:  487 SGGQRQRIAIARALLKNAPILILDEATSALDAESERYVQQALEVLMQNRTTLVIAHRLSTIQNADQICVMRGGRIIECGTHAQLMAARGGYADLYAMQ 584          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_PSEPF1.822e-2151.06Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_MANSM1.822e-2150.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAES11.822e-2151.00Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_ASPFU1.822e-2152.00Iron-sulfur clusters transporter atm1, mitochondri... [more]
YWJA_BACSU2.380e-2153.19Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_XANOR2.380e-2146.94Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANOM2.380e-2146.94Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SYNAS2.380e-2150.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_POLSJ2.380e-2151.58Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_METCA2.380e-2150.00Lipid A export ATP-binding/permease protein msbA O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
back to top