DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 48/94 (51.06%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+A+ARA LK P ILL DEATSALD+++E+ +  AL  +   RT++ +AHRL T    D I V++ G+V+E G+H++L+ K+G YA L
Sbjct:  505 SGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASL 598          

HSP 2 Score: 95.5153 bits (236), Expect = 1.306e-19
Identity = 47/95 (49.47%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQL 485
            SGG+KQR+A+ARA LK P +LL DEATSALD+ +E  +  AL+ L   RT++ +AHRL+T    D I V+++G+++EQGSH +L+++  G Y++L
Sbjct: 1150 SGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRL 1244          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: YKNV_BACSU (Uncharacterized ABC transporter ATP-binding protein yknV OS=Bacillus subtilis GN=yknV PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = -2
Query:  180 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTA 485
            S G++Q ++ ARA L  P I++ DEAT+++D+ TE +I  ALK+L   RT++ IAHRL+T    D IIVL++G+ IE+G+HD LL K G YA L   Q +TA
Sbjct:  501 SAGQRQLISFARALLADPAIIILDEATASIDTETEVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKGGIYAGLVKAQYSTA 602          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL++L   RT++ IAHRL+T  + D I+V+E G+++E GSH +LL + G YA L
Sbjct:  494 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGSHRELLAQDGLYAHL 587          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_ASPOR (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus oryzae GN=atm1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN--RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGGEKQR+A++R  LK P +L  DEATSALD+ TE  +L  + S+  +  RTS+F+AHRL T    D+I+VL+ G+V E GSH +LL   G YA+LW  Q
Sbjct:  590 SGGEKQRLAISRLILKDPELLFFDEATSALDTYTEQALLQNINSVLKDKARTSVFVAHRLRTICDSDQILVLKEGRVAETGSHRELLELDGIYAELWNAQ 689          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+A+ARA ++ P ILL DEATSALD  +E  I NAL  +A  RT++ +AH+L+T    + I +LENG V E GSH+DL+TK   YA+L
Sbjct:  500 SGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAHKLSTVRGANIIAMLENGSVRELGSHEDLMTKNNHYAKL 593          

HSP 2 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+A+ARAFL++P ILL DE TS+LDS +E E+ +AL  +  + N T++ +AHRL T    D I ++ +G VIE GS+D L    G++++L
Sbjct: 1138 SGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMTTVVVAHRLNTLKNLDCIALIVDGTVIETGSYDHLKNIGGQFSRL 1233          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPB (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB18) GN=ndvA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TEA++  AL  +   RT+  IAHRL+T      I+V E G+VIE G+ D+LL + G +A L
Sbjct:  483 SGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFEAGRVIESGTFDELLARQGHFAAL 576          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHIRD (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium radiobacter GN=ndvA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+A+ARA LK  PIL+ DEATSALD  TEA +  A+ +L  NRT+  IAHRL+T    D ++ L+ G++IE+G+ D+L  + GR+  L
Sbjct:  473 SGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIEKGTFDELTQRGGRFTSL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_AGRT5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndvA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+A+ARA LK  PIL+ DEATSALD  TEA +  A+ +L  NRT+  IAHRL+T    D ++ L+ G++IE+G+ D+L  + GR+  L
Sbjct:  473 SGGERQRIAIARAILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIEKGTFDELTQRGGRFTSL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XANCP (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris GN=msbA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL  L  +RT++ IAHRL+T    D+++V++ G+++E+G+H +LL   G Y+ L G Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XANC8 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEAT+ALD+ +E  + +AL  L  +RT++ IAHRL+T    D+++V++ G+++E+G+H +LL   G Y+ L G Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELLALGGLYSHLHGMQ 583          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB19B_ARATH2.380e-2151.06ABC transporter B family member 19 OS=Arabidopsis ... [more]
YKNV_BACSU3.108e-2149.02Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_BURXL3.108e-2152.13Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_ASPOR3.108e-2152.00Iron-sulfur clusters transporter atm1, mitochondri... [more]
AB8B_ARATH3.108e-2154.26Putative ABC transporter B family member 8 OS=Arab... [more]
NDVA_RHOPB4.060e-2153.19Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHIRD4.060e-2151.06Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_AGRT54.060e-2151.06Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_XANCP4.060e-2146.94Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANC84.060e-2146.94Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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