DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_XANAC (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas axonopodis pv. citri GN=msbA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 45/98 (45.92%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  P+L+ DEAT+ALD+ +E  + +AL  L  +RT++ IAHRL+T    D+++V++ G+++E+G+H  LL + G Y+ L G Q
Sbjct:  486 SGGQRQRLAIARAMLKDAPVLILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQGGLYSHLHGMQ 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_PASMU (Lipid A export ATP-binding/permease protein msbA OS=Pasteurella multocida GN=msbA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I  AL+ L   RT I IAHRL+T    DEI+V+E+G++ E+GSH +LL   G Y QL   Q N
Sbjct:  482 SGGQRQRLAIARALLRNSPVLILDEATSALDTESERSIQLALEKLQKERTVIVIAHRLSTIENADEILVIEHGEIKERGSHSELLALNGAYKQLHHIQVN 581          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_FRATT (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis GN=msbA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR+++ARA LK  P+L+ DEATSALD+ +E  +  AL+SL  + T+I IAHRL+T    D+I+V++ G+V+E G H +LL + G Y +L+
Sbjct:  510 SGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQGGLYTRLY 604          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_FRAT1 (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=msbA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR+++ARA LK  P+L+ DEATSALD+ +E  +  AL+SL  + T+I IAHRL+T    D+I+V++ G+V+E G H +LL + G Y +L+
Sbjct:  510 SGGQRQRISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQGGLYTRLY 604          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_NEUCR (Iron-sulfur clusters transporter atm-1, mitochondrial OS=Neurospora crassa GN=atm-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAE-------ILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGGEKQR+A++R  LK PP+L  DEATSALD+ TE         IL  L      +TS+F+AHRL T    D IIVL+ G+V EQG+H +L+ + G YAQLW  Q
Sbjct:  587 SGGEKQRLAVSRLILKDPPLLFFDEATSALDTHTEQALMENINAILKGLGQKGEKKTSLFVAHRLRTIYDSDLIIVLKEGRVAEQGTHRELMERNGVYAQLWRAQ 691          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_GIBZE (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Gibberella zeae GN=ATM1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGGEKQR+A++R  LK PP+L  DEATSALD+ TE  ++  + S+   R  TS+F+AHRL T    D IIVL+ G V E G+H +L+ + G YA+LW  Q
Sbjct:  577 SGGEKQRLAVSRILLKDPPLLFFDEATSALDTHTEQALMMNINSILRERGRTSVFVAHRLRTIFDSDLIIVLKEGHVAEMGTHRELIDRDGVYAELWSAQ 676          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB5_DICDI (ABC transporter B family member 5 OS=Dictyostelium discoideum GN=abcB5 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVI-EQGSHDDLLTKAGRYAQLW 485
            SGGEKQRV++ARA LK  PI+  DEATS+LD+  E  I++AL+ L   RT+I IAHRL+T +  DEIIVL  G +I E+G+H  LL   G+Y  +W
Sbjct:  598 SGGEKQRVSIARAILKDSPIVFYDEATSSLDTEKEKLIMDALRELFKGRTTIMIAHRLSTIVDADEIIVLGTGGIILERGNHQQLLELEGKYRSMW 693          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  165 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLL-TKAGRYAQLWGQQNNTADAIDA 485
            SGG+KQR+A+ARA LK P ILL DEATSALD+ +E  +  AL  +  NRT++ +AHRL+T    D I V+  GK++E+GSH +LL    G Y+QL   Q +T    D+
Sbjct:  543 SGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDS 650          

HSP 2 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT-KAGRYAQL 485
            SGG+KQRVA+ARA +K P +LL DEATSALD+ +E  + +AL  +  NRT++ +AHRL+T    D I V++NG ++E+G H+ L+  K G YA L
Sbjct: 1189 SGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASL 1283          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: YFIC_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiC OS=Bacillus subtilis GN=yfiC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            S G+KQ +++ARA L  P +L+ DEATS +D+ TE  I  AL  L   RTS+ IAHRL T  + D+I+VL+NG++IE+GSHD+L+ + G Y+ L+  Q
Sbjct:  504 SQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHRLNTIQRADQIVVLKNGEMIEKGSHDELIRQKGFYSDLYESQ 601          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y1383_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  162 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAA 485
            SGGE+QR+ +ARA L   P+L+ DEAT+  D  +E  +  AL  L  +RT + IAHRL T  + D+I+VL++G+++E+G+H++LL   GRY +LW     +  A+ AA
Sbjct:  747 SGGERQRLTIARAILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVERGTHEELLAAGGRYCRLWDTGQGSRVAVAAA 854          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_XANAC5.302e-2145.92Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PASMU5.302e-2152.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRATT5.302e-2148.42Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRAT15.302e-2148.42Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_NEUCR5.302e-2151.43Iron-sulfur clusters transporter atm-1, mitochondr... [more]
ATM1_GIBZE5.302e-2151.00Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCB5_DICDI5.302e-2154.17ABC transporter B family member 5 OS=Dictyostelium... [more]
AB21B_ARATH5.302e-2149.07ABC transporter B family member 21 OS=Arabidopsis ... [more]
YFIC_BACSU6.925e-2148.98Uncharacterized ABC transporter ATP-binding protei... [more]
Y1383_MYCBO6.925e-2143.52Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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