DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_HUMAN (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 53/107 (49.53%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW----GQQNNTAD 485
            SGGEKQRVA+AR  LKAP I+L DEATSALD++ E  I  +L  +  NRT+I +AHRL+T +  D+I+V+++G ++E+G H+ LL++ G YA +W    GQ+  + D
Sbjct:  728 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSED 834          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SALPA (Lipid A export ATP-binding/permease protein msbA OS=Salmonella paratyphi A GN=msbA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  Q DEI+V+E+G ++E+G+H +LL + G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLMIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_AGRVI (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium vitis GN=ndvA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = -2
Query:  150 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVKLG 485
            SGGE+QR+A+ARA LK  PIL+ DEATSALD  TE  + +A+  L  NRT+  IAHRL+T  + D+++ L++G+++E G +D+L  K GR+A L        D    AVK+G
Sbjct:  473 SGGERQRIAIARAILKDAPILVLDEATSALDVETEERVKSAIDRLRQNRTTFIIAHRLSTVREADQVLFLDHGRIVEMGGYDELSAKGGRFAALLHTSGLLNDDDKTAVKVG 584          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SALTY (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhimurium GN=msbA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  Q DEI+V+E+G ++E+G+H +LL + G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SALTI (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhi GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  Q DEI+V+E+G ++E+G+H +LL + G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SALCH (Lipid A export ATP-binding/permease protein msbA OS=Salmonella choleraesuis GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  Q DEI+V+E+G ++E+G+H +LL + G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB6_HUMAN1.141e-2349.53ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_SALPA1.491e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_AGRVI1.947e-2347.32Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_SHISS1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIFL1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIDS1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIBS1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALTY1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALTI1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALCH1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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