DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G ++E+G+H+DLL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: HMT1_SCHPO (Heavy metal tolerance protein OS=Schizosaccharomyces pombe GN=hmt1 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQ 485
            SGGEKQRVA+ARA LK P I+L DEATSALD+ TE +I  AL  LA+ RT+I IAHRL+T    D I+ + NG+++E G+H++L+ +  G Y ++W QQ
Sbjct:  722 SGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRDGGAYKKMWFQQ 820          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPL (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Lens) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEATSALDS +E  I  AL+ + N RT++ IAHRL+T     +IIV+++G+++EQGSH +LL   G YAQL+  Q
Sbjct:  480 SGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMNGRTTLIIAHRLSTIKHAHKIIVMQHGRIVEQGSHQELLDMDGHYAQLYKVQ 577          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_IDILO (Lipid A export ATP-binding/permease protein msbA OS=Idiomarina loihiensis GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.321e-23
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I +AL +L  NRT+I IAHRL+T    DEI+V++NG++IE+G+H  LL + G Y QL   Q
Sbjct:  480 SGGQRQRIAIARALLQDAPILILDEATSALDTESERHIQDALGTLRKNRTAIVIAHRLSTIENADEILVMDNGEIIERGTHQQLLDQEGAYFQLHNLQ 577          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_SCHPO (Iron-sulfur clusters transporter atm1, mitochondrial OS=Schizosaccharomyces pombe GN=atm1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.337e-23
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = -2
Query:  174 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW-------GQQNNTADA 485
            SGGEKQR+A++R  LK P IL  DEATSALD+ TE  +L  +  L   +++TS+FIAHRL T   CD I VLE G+V+EQGSH+ L+ K   Y  +W       G+ N + DA
Sbjct:  581 SGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLIKGSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMWHSQESPFGESNKSGDA 693          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: Y2003_STAA8 (Putative multidrug export ATP-binding/permease protein SAOUHSC_02003 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02003 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.665e-23
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  189 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 485
            SGG+KQR+++AR FL  PPIL+ DEATSALD  +E+ I  AL  L+ +RT++ +AHRL+T    D+I+V+ENG ++E G+H +L+ K G Y  L+  QN
Sbjct:  479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_ECOUT1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOLI1.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL61.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL51.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECO571.947e-2355.10Lipid A export ATP-binding/permease protein msbA O... [more]
HMT1_SCHPO1.947e-2354.55Heavy metal tolerance protein OS=Schizosaccharomyc... [more]
MSBA_LEGPL2.543e-2354.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_IDILO3.321e-2354.08Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_SCHPO4.337e-2349.56Iron-sulfur clusters transporter atm1, mitochondri... [more]
Y2003_STAA85.665e-2350.51Putative multidrug export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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