DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP5_RAT (Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR++LARA      I + D+  SALD+     I N A++    ++T +F+ H+L   + CDE+I ++ G + E+G+H++L+   G YA ++
Sbjct:  686 SGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKRLKSKTVLFVTHQLQYLVDCDEVIFMKEGCITERGTHEELMNLNGDYATIF 781          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP5_MOUSE (Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR++LARA      I + D+  SALD+     I N A++    ++T +F+ H+L   + CDE+I ++ G + E+G+H++L+   G YA ++
Sbjct:  686 SGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKRLKSKTVLFVTHQLQYLVDCDEVIFMKEGCITERGTHEELMNLNGDYATIF 781          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_VIBPA (Methionine import ATP-binding protein metN OS=Vibrio parahaemolyticus GN=metN PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK +    N T + I H +      C E+ ++  G+++E+G+  D+
Sbjct:  142 SGGQKQRVAIARALASDPSVLLCDEATSALDPATTQSILELLKEINRKLNITILLITHEMEVVKSICHEVAIIGGGELVEKGTVGDI 228          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SHISS (Methionine import ATP-binding protein metN OS=Shigella sonnei (strain Ss046) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SHIFL (Methionine import ATP-binding protein metN OS=Shigella flexneri GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SHIF8 (Methionine import ATP-binding protein metN OS=Shigella flexneri serotype 5b (strain 8401) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SHIDS (Methionine import ATP-binding protein metN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SHIBS (Methionine import ATP-binding protein metN OS=Shigella boydii serotype 4 (strain Sb227) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_ECOUT (Methionine import ATP-binding protein metN OS=Escherichia coli (strain UTI89 / UPEC) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_ECOLI (Methionine import ATP-binding protein metN OS=Escherichia coli (strain K12) GN=metN PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MRP5_RAT1.184e-1235.42Multidrug resistance-associated protein 5 OS=Rattu... [more]
MRP5_MOUSE1.184e-1235.42Multidrug resistance-associated protein 5 OS=Mus m... [more]
METN_VIBPA1.184e-1243.68Methionine import ATP-binding protein metN OS=Vibr... [more]
METN_SHISS1.184e-1245.56Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIFL1.184e-1245.56Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIF81.184e-1245.56Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIDS1.184e-1245.56Methionine import ATP-binding protein metN OS=Shig... [more]
METN_SHIBS1.184e-1245.56Methionine import ATP-binding protein metN OS=Shig... [more]
METN_ECOUT1.184e-1245.56Methionine import ATP-binding protein metN OS=Esch... [more]
METN_ECOLI1.184e-1245.56Methionine import ATP-binding protein metN OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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