DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_ECOL6 (Methionine import ATP-binding protein metN OS=Escherichia coli O6 GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_ECOL5 (Methionine import ATP-binding protein metN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_ECO57 (Methionine import ATP-binding protein metN OS=Escherichia coli O157:H7 GN=metN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_ENTFA (Methionine import ATP-binding protein metN 2 OS=Enterococcus faecalis GN=metN2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  225 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T  E+L  L  +    N T + I H +    + C+ + V+E G+++E+G   D+  K
Sbjct:  144 SGGQKQRVGIARALANNPDILLCDEATSALDPQTTDEVLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKK 233          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN1_SALTY (Methionine import ATP-binding protein metN 1 OS=Salmonella typhimurium GN=metN1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN1_SALTI (Methionine import ATP-binding protein metN 1 OS=Salmonella typhi GN=metN1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN1_SALPA (Methionine import ATP-binding protein metN 1 OS=Salmonella paratyphi A GN=metN1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN1_SALCH (Methionine import ATP-binding protein metN 1 OS=Salmonella choleraesuis GN=metN1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD + V+ NG++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MDR_PLAFF (Multidrug resistance protein OS=Plasmodium falciparum (isolate FC27 / Papua New Guinea) GN=MDR1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGK-----VIEQGSHDDLLT 485
            SGG+KQR+A+ARA L+ P ILL DEATS+LDS +E  I   +  + +  ++T I IAHR+ +  + D+I+V  N       V   G+HD+LL+
Sbjct: 1313 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRNGTFVQSHGTHDELLS 1405          

HSP 2 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  213 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGK------------------------------VIEQGSHDDLL-TKAGRY 485
            SGG+KQR+++ARA ++ P IL+ DEATS+LD+ +E  +   + +L    NR +I IAHRL+T    + I VL N +                              +IEQG+HD L+  K G Y
Sbjct:  564 SGGQKQRISIARAIMRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERSDNNNNNNNDDNNNNNNNNNNKINNEGSYIIEQGTHDSLMKNKNGIY 687          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABC1_ENCCU (Probable ABC transporter ECU01_0200/ECU01_1410 OS=Encephalitozoon cuniculi GN=ECU01_0200 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  213 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRY 485
            SGGE Q V+LAR FLK  P++L DEATS LD+ TE ++   +  +   +T + + H L      D +I++++G V E G+H +L+   G Y
Sbjct:  498 SGGEMQMVSLARCFLKDAPLMLLDEATSKLDAETERDVFGLMMGM-RGKTIVMVLHDLWMTEHLDRVILVDSGTVKEVGTHSELMGLRGMY 587          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN_ECOL61.184e-1245.56Methionine import ATP-binding protein metN OS=Esch... [more]
METN_ECOL51.184e-1245.56Methionine import ATP-binding protein metN OS=Esch... [more]
METN_ECO571.184e-1245.56Methionine import ATP-binding protein metN OS=Esch... [more]
METN2_ENTFA1.184e-1243.33Methionine import ATP-binding protein metN 2 OS=En... [more]
METN1_SALTY1.184e-1245.56Methionine import ATP-binding protein metN 1 OS=Sa... [more]
METN1_SALTI1.184e-1245.56Methionine import ATP-binding protein metN 1 OS=Sa... [more]
METN1_SALPA1.184e-1245.56Methionine import ATP-binding protein metN 1 OS=Sa... [more]
METN1_SALCH1.184e-1245.56Methionine import ATP-binding protein metN 1 OS=Sa... [more]
MDR_PLAFF1.184e-1244.09Multidrug resistance protein OS=Plasmodium falcipa... [more]
ABC1_ENCCU1.184e-1239.56Probable ABC transporter ECU01_0200/ECU01_1410 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
back to top