DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: TAP1_HUMAN (Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  174 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADA 485
            SGG++Q VALARA ++ P +L+ D+ATSALD+ ++ ++   L       +R+ + I   L+   Q D I+ LE G + E G+H  L+ K G Y   W      ADA
Sbjct:  704 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY---WAMVQAPADA 806          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: TAP1_GORGO (Antigen peptide transporter 1 OS=Gorilla gorilla gorilla GN=TAP1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  174 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADA 485
            SGG++Q VALARA ++ P +L+ D+ATSALD+ ++ ++   L       +R+ + I   L+   Q D I+ LE G + E G+H  L+ K G Y   W      ADA
Sbjct:  644 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY---WAMVQAPADA 746          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP5_HUMAN (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR++LARA      I + D+  SALD+     I N A++    ++T +F+ H+L   + CDE+I ++ G + E+G+H++L+   G YA ++
Sbjct:  686 SGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQYLVDCDEVIFMKEGCITERGTHEELMNLNGDYATIF 781          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_RHORT (Methionine import ATP-binding protein metN OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=metN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRV +ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +       D + VL++G+V+EQG   D+ T
Sbjct:  142 SGGQKQRVGIARALASKPSVLLCDEATSALDPETTKSILALLKDI-NRRLGLTIVLITHEMHVIKDIADRVAVLDHGRVVEQGRVFDVFT 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_RALEJ (Methionine import ATP-binding protein metN OS=Ralstonia eutropha (strain JMP134) GN=metN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  225 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 485
            SGG+KQRV +ARA    P +LL DEATSALD  T   IL+ LK +      T + I H++    Q CD + VLE G+V+E+G   D+  +
Sbjct:  142 SGGQKQRVGIARALASKPKVLLSDEATSALDPETTRSILDLLKQINRELGLTIVMITHQMEVIKQVCDRVAVLEAGRVVEEGRVIDVFLR 231          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_HELPH (Methionine import ATP-binding protein metN OS=Helicobacter pylori (strain HPAG1) GN=metN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT--KAGRYAQLWGQQNNTAD 485
            SGG+KQRVA+AR+    P +LLCDEATSALDS T   IL  L  +    + + +FI H +    + C+++ V+ +G+++E+G  +++    K     +L G +N   D
Sbjct:  140 SGGQKQRVAIARSLANCPDLLLCDEATSALDSKTTHSILTLLSGIQKKLDLSIVFITHEIEVVKELCNQMCVISSGEIVERGLVEEIFANPKHAVTKELLGIKNEHGD 247          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_BURXL (Methionine import ATP-binding protein metN 2 OS=Burkholderia xenovorans (strain LB400) GN=metN2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA +  P ILLCDEATSALD  T   IL  L+ +    N T + I H +    + CD + V+E G+V+E G
Sbjct:  173 SGGQKQRVGIARALVTDPDILLCDEATSALDPETTQAILALLRDINQRLNLTVVLITHEMQVIREVCDTVAVIERGEVVETG 254          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AARD_PROST (Transport ATP-binding protein aarD OS=Providencia stuartii GN=aarD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            S G+ QRVA+AR  LK   ILL DE  ++LD+ +E  +++ L  LA  +T+I + H L   +  D+I V+ NG++I++G +  L    G +A+L
Sbjct:  487 SVGQAQRVAVARTLLKPSRILLLDEPAASLDAHSEKRVMHTLNQLAQQQTTIMVTHLLEETVNYDQIWVMANGQIIQRGHYAQLSQSEGPFARL 580          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: YEJF_ECOLI (Uncharacterized ABC transporter ATP-binding protein yejF OS=Escherichia coli (strain K12) GN=yejF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRL-TTAMQCDEIIVLENGKVIEQG 485
            SGG++QR+A+ARA +  P +++ DE TS+LD T +A+IL  LKSL        +FI+H L      C ++I+L  G+V+EQG
Sbjct:  427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQG 508          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP6_RAT (Multidrug resistance-associated protein 6 OS=Rattus norvegicus GN=Abcc6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            S G+KQ + LARA L+   IL+ DEAT+++D  TE ++  AL+      T + IAHRL + M C  ++V++ G+V E GS   LL + G + +L
Sbjct: 1402 SVGQKQLLCLARALLRKTQILILDEATASVDPGTEIQMQAALERWFAQCTVLLIAHRLRSVMNCARVLVMDEGQVAESGSPAQLLAQKGLFYRL 1495          

HSP 2 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  219 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL---KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 485
            SGG+KQR++LARA  +   + L D+  +ALD+    E+   +     L    T I + H L    Q D+I+VL NG + E GS+ DLL + G
Sbjct:  752 SGGQKQRLSLARAVYRRAAVYLMDDPLAALDAHVSQEVFKQVIGPSGLLQGTTRILVTHTLHVLPQADQILVLANGTIAEMGSYQDLLHRNG 843          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TAP1_HUMAN1.546e-1237.74Antigen peptide transporter 1 OS=Homo sapiens GN=T... [more]
TAP1_GORGO1.546e-1237.74Antigen peptide transporter 1 OS=Gorilla gorilla g... [more]
MRP5_HUMAN1.546e-1235.42Multidrug resistance-associated protein 5 OS=Homo ... [more]
METN_RHORT1.546e-1246.67Methionine import ATP-binding protein metN OS=Rhod... [more]
METN_RALEJ1.546e-1244.44Methionine import ATP-binding protein metN OS=Rals... [more]
METN_HELPH1.546e-1237.04Methionine import ATP-binding protein metN OS=Heli... [more]
METN2_BURXL1.546e-1247.56Methionine import ATP-binding protein metN 2 OS=Bu... [more]
AARD_PROST1.546e-1238.30Transport ATP-binding protein aarD OS=Providencia ... [more]
YEJF_ECOLI2.019e-1243.90Uncharacterized ABC transporter ATP-binding protei... [more]
MRP6_RAT2.019e-1240.43Multidrug resistance-associated protein 6 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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