DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP6_HUMAN (Multidrug resistance-associated protein 6 OS=Homo sapiens GN=ABCC6 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            S G+KQ + LARA L+   IL+ DEAT+A+D  TE ++   L S     T + IAHRL + M C  ++V++ G+V E GS   LL + G + +L
Sbjct: 1403 SVGQKQLLCLARALLRKTQILILDEATAAVDPGTELQMQAMLGSWFAQCTVLLIAHRLRSVMDCARVLVMDKGQVAESGSPAQLLAQKGLFYRL 1496          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_THEFY (Methionine import ATP-binding protein metN OS=Thermobifida fusca (strain YX) GN=metN PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  219 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAG 485
            SGG+KQRV +ARA    P +LL DEATSALD  T A IL+ L+ L      T + I H +    + CD + +++ G V+E G   DLL   G
Sbjct:  142 SGGQKQRVGIARALAPRPTVLLSDEATSALDPATTASILDLLRDLNRELGLTILLITHEMDVVKRICDAVAIMDRGSVVETGRTVDLLRTPG 233          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_SODGM (Methionine import ATP-binding protein metN OS=Sodalis glossinidius (strain morsitans) GN=metN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD++ V+  G++IEQ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTHSILALLKDI-NQRLGLTILLITHEMDVVKRICDQVAVISQGELIEQDTVSEMFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_CAUCR (Methionine import ATP-binding protein metN OS=Caulobacter crescentus GN=metN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P +LLCDEATSALD  T  +IL+ +  L      T + I H +    + CD + VL+ G+V+E+G+ +++
Sbjct:  140 SGGQKQRVGIARALATNPKVLLCDEATSALDPETTEQILDLIAGLNRELGLTIVLITHEMDVVRRVCDRVAVLDAGRVVEEGAVEEV 226          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_CARHZ (Methionine import ATP-binding protein metN OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P ILLCDE TSALD  T  +IL  L  +      T + I H +    + CD + V++NG+V+E+G   D+
Sbjct:  141 SGGQKQRVGIARAIAANPKILLCDEPTSALDPQTTGQILKLLAEINQKLGITIVIITHEMRVITEICDRVAVMDNGRVVEEGVVTDV 227          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN3_ERWCT (Methionine import ATP-binding protein metN 3 OS=Erwinia carotovora subsp. atroseptica GN=metN3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = -2
Query:  228 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  LK + N R   T + I H +    + CD++ V+ +G++IE+ +  ++ +
Sbjct:  142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKRICDQVAVISDGRLIEKDTVSEVFS 230          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_PSEE4 (Methionine import ATP-binding protein metN 2 OS=Pseudomonas entomophila (strain L48) GN=metN2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T A +L  L  +      T + I H +    + CD + V++ GK++EQG
Sbjct:  143 SGGQKQRVGIARALSTNPKILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDRVAVMDAGKIVEQG 224          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_PSEAE (Methionine import ATP-binding protein metN 2 OS=Pseudomonas aeruginosa GN=metN2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T A +L  L  +      T + I H +    + CD++ V++ G ++EQG   D+
Sbjct:  143 SGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADV 229          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_PSEAB (Methionine import ATP-binding protein metN 2 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metN2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T A +L  L  +      T + I H +    + CD++ V++ G ++EQG   D+
Sbjct:  143 SGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADV 229          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_LISMF (Methionine import ATP-binding protein metN 2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metN2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.019e-12
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA    P +LLCDEATSALD  T  E+L  L  + N R   T I I H +    + C+ + V+ENGKV+E G
Sbjct:  142 SGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDEVLELLLDI-NKRLHLTIIVITHEMHVIRKICNRVAVMENGKVVELG 223          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MRP6_HUMAN2.019e-1241.49Multidrug resistance-associated protein 6 OS=Homo ... [more]
METN_THEFY2.019e-1243.48Methionine import ATP-binding protein metN OS=Ther... [more]
METN_SODGM2.019e-1244.44Methionine import ATP-binding protein metN OS=Soda... [more]
METN_CAUCR2.019e-1242.53Methionine import ATP-binding protein metN OS=Caul... [more]
METN_CARHZ2.019e-1243.68Methionine import ATP-binding protein metN OS=Carb... [more]
METN3_ERWCT2.019e-1243.33Methionine import ATP-binding protein metN 3 OS=Er... [more]
METN2_PSEE42.019e-1246.34Methionine import ATP-binding protein metN 2 OS=Ps... [more]
METN2_PSEAE2.019e-1243.68Methionine import ATP-binding protein metN 2 OS=Ps... [more]
METN2_PSEAB2.019e-1243.68Methionine import ATP-binding protein metN 2 OS=Ps... [more]
METN2_LISMF2.019e-1249.40Methionine import ATP-binding protein metN 2 OS=Li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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