DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MRP2_HUMAN (Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  213 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRY 479
            G++Q + L RA L+   IL+ DEAT+A+D  T+  I   +++   + T I IAHRL T M  D+++VL+NGK+IE GS ++LL   G +
Sbjct: 1440 GQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPGPF 1528          

HSP 2 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  207 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL---KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQ 485
            SGG+KQR++LARA  +   I L D+  SA+D+     I N +     L   +T + + H +    Q DEI+VL NG ++E+GS+  LL K G +A+
Sbjct:  762 SGGQKQRISLARATYQNLDIYLLDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKGSYSALLAKKGEFAK 857          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_XANOR (Methionine import ATP-binding protein metN OS=Xanthomonas oryzae pv. oryzae GN=metN PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T A +L  L  +      T + I H +    + CD + VL+ GK++E G
Sbjct:  142 SGGQKQRVGIARALATGPQILLCDEATSALDPQTTASVLQLLAQINRELGLTIVLITHEMDVIRRVCDRVAVLDAGKLVETG 223          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_XANOM (Methionine import ATP-binding protein metN OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=metN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T A +L  L  +      T + I H +    + CD + VL+ GK++E G
Sbjct:  142 SGGQKQRVGIARALATGPQILLCDEATSALDPQTTASVLQLLAQINRELGLTIVLITHEMDVIRRVCDRVAVLDAGKLVETG 223          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_VIBF1 (Methionine import ATP-binding protein metN OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=metN PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI---FIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRVA+ARA    P +LLCDEATSALD  T   IL  +K L N + SI    I H +      C E+ ++  G+++E+G+  D+
Sbjct:  142 SGGQKQRVAIARALSTDPKVLLCDEATSALDPATTKSILELIKDL-NRKLSITILIITHEMEVVKNICHEVAIIGGGELVEKGAVSDI 228          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_RHOP5 (Methionine import ATP-binding protein metN OS=Rhodopseudomonas palustris (strain BisA53) GN=metN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P +LL DEATSALD  T  +IL+ LK +    + T +FI H +       D + V+E G+++E+GS  D+
Sbjct:  171 SGGQKQRVGIARALATEPSVLLSDEATSALDPETTDQILDLLKQINRDLHLTILFITHEMAVVKALADRVAVIEGGRIVEEGSTFDV 257          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_RALME (Methionine import ATP-binding protein metN OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=metN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  225 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 485
            SGG+KQRV +ARA    P +LL DEATSALD  T   IL+ LK +      T + I H++    Q CD + VLE G+V+E G   D+  +
Sbjct:  142 SGGQKQRVGIARALASKPKVLLSDEATSALDPETTRAILDLLKQINRELGLTIVMITHQMEVIKQVCDRVAVLEAGQVVESGRVIDVFLR 231          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN_LACC3 (Methionine import ATP-binding protein metN OS=Lactobacillus casei (strain ATCC 334) GN=metN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = -2
Query:  153 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVKL 485
            SGG+KQRV +ARA    P IL+ DEATSALD  T + IL  L+SL N R   T + I H++    Q C+ + V+++G +IE G   DLL           QQ  T D ID  ++L
Sbjct:  146 SGGQKQRVGIARALASDPEILISDEATSALDPKTTSSILELLQSL-NQRLGLTIVLITHQMEAVKQICNRVAVMDDGAIIECG---DLLQVFSN-----PQQQLTKDFIDTTLQL 251          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_ERWCT (Methionine import ATP-binding protein metN 2 OS=Erwinia carotovora subsp. atroseptica GN=metN2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  234 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 485
            SGG+KQRV +ARA    P +LLCDE TSALD  T A IL  LK +      T + I+H ++     CD + V+  G+V+E+G   D+
Sbjct:  143 SGGQKQRVGIARAIANDPEVLLCDEPTSALDLETSAAILALLKEINEKLGITIVLISHEMSVIKAVCDRVAVMTGGRVVEEGDVFDI 229          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: METN2_ACIAD (Methionine import ATP-binding protein metN 2 OS=Acinetobacter sp. (strain ADP1) GN=metN2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  249 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 485
            SGG+KQRV +ARA    P ILLCDEATSALD  T   +L  LK +   +  T + + H +      CD + V+E+G VIE G
Sbjct:  142 SGGQKQRVGIARALANHPKILLCDEATSALDPQTTKSVLALLKKINKEQGITIVMVTHEMDVIESICDHVAVMESGHVIETG 223          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB12C_ARATH (ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 35/87 (40.23%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  225 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 485
            S G++Q ++LARA L+   IL+ DEAT+++D  T++ I   ++    + T + IAHRL T + CD+I+VL +G+V+E  S  +LL++
Sbjct: 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MRP2_HUMAN4.499e-1242.70Canalicular multispecific organic anion transporte... [more]
METN_XANOR4.499e-1246.34Methionine import ATP-binding protein metN OS=Xant... [more]
METN_XANOM4.499e-1246.34Methionine import ATP-binding protein metN OS=Xant... [more]
METN_VIBF14.499e-1244.32Methionine import ATP-binding protein metN OS=Vibr... [more]
METN_RHOP54.499e-1243.68Methionine import ATP-binding protein metN OS=Rhod... [more]
METN_RALME4.499e-1244.44Methionine import ATP-binding protein metN OS=Rals... [more]
METN_LACC34.499e-1242.61Methionine import ATP-binding protein metN OS=Lact... [more]
METN2_ERWCT4.499e-1243.68Methionine import ATP-binding protein metN 2 OS=Er... [more]
METN2_ACIAD4.499e-1246.34Methionine import ATP-binding protein metN 2 OS=Ac... [more]
AB12C_ARATH4.499e-1240.23ABC transporter C family member 12 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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