DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPS (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB5) GN=ndvA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = -2 
Query:  159 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAV 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TEA++  AL  +   RT+  IAHRL+T      I+V +NGKVIE G+ D+L+ + GR+A+L   Q    +   AAV
Sbjct:  483 SGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGKVIESGTFDELVAQRGRFAELARAQFMVQEEARAAV 591
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_YERPS (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pseudotuberculosis GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G+++E+G H +LL + G YAQL
Sbjct:  482 SGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQQGVYAQL 575
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_YERPN (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G+++E+G H +LL + G YAQL
Sbjct:  482 SGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQQGVYAQL 575
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_YERPE (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G+++E+G H +LL + G YAQL
Sbjct:  482 SGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQQGVYAQL 575
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_YERPA (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 52/94 (55.32%), Postives = 72/94 (76.60%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T  + DEI+V+E+G+++E+G H +LL + G YAQL
Sbjct:  482 SGGQRQRIAIARALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQQGVYAQL 575
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL +L  NRTS+ IAHRL+T  + DEI+V+  G+++E+G+H++L+++ G YAQL
Sbjct:  482 SGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELMSRQGVYAQL 575
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHEDO (Lipid A export ATP-binding/permease protein msbA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I   L +L +NRTSI IAHRL+T    DEI+V++ GK+IE+G+H  L+ K G YA L+  Q
Sbjct:  500 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQLGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIIERGTHASLIEKKGAYAGLYQMQ 597
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEATSALDS +E  I  AL+ +   RT++ IAHRL+T     +IIVL++G+++EQGSH +LL   G YAQL+  Q
Sbjct:  480 SGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELLDMDGHYAQLYKVQ 577
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEATSALDS +E  I  AL+ +   RT++ IAHRL+T     +IIVL++G+++EQGSH +LL   G YAQL+  Q
Sbjct:  480 SGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELLDMDGHYAQLYKVQ 577
[Close]
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.262e-22
Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = -2 
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QRVA+ARA L+  P+L+ DEATSALD+ +E  I +AL  L  N+T + IAHRL+T  + D+I+V+++G V+E+GSH +L+ K G YAQL
Sbjct:  482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIEKDGAYAQL 575
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDVA_RHOPS7.398e-2350.46Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_YERPS7.398e-2355.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPN7.398e-2355.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPE7.398e-2355.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPA7.398e-2355.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SODGM7.398e-2353.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHEDO7.398e-2353.06Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPH7.398e-2354.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPA7.398e-2354.08Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBVU1.262e-2253.19Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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