DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURS3 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.262e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL+ L   RT++ IAHRL+T  + D I+VLE GK++E+GSHD+LL   G YA L
Sbjct:  490 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHGGLYAHL 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURCA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia cenocepacia (strain AU 1054) GN=msbA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.262e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL+ L   RT++ IAHRL+T  + D I+VLE GK++E+GSHD+LL   G YA L
Sbjct:  490 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHGGLYAHL 583          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: YGAD_BACSU (Putative multidrug export ATP-binding/permease protein ygaD OS=Bacillus subtilis GN=ygaD PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  189 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 485
            SGG+KQR+++AR FLK PP+L+ DEATSALD  +E  I  A+  LA +RT+  +AHRL+T    D+I+V+ENG +IE G+HD+L+    +Y  L+  QN
Sbjct:  480 SGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELMDYESQYKHLFTIQN 578          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisA53) GN=ndvA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = -2
Query:  159 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAV 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TEA++  AL  +   RT+  IAHRL+T      I+V +NG+VIE GS D+LL + G +A+L   Q    D+  +A+
Sbjct:  483 SGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGRVIESGSFDELLARRGYFAELAHAQFMVQDSARSAM 591          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain HaA2) GN=ndvA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = -2
Query:  147 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVKLGA 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TEA++  AL  +   RT+  IAHRL+T      I+V ENG+VIE G+ DDL+ + G +A+L   Q    +   A+V   A
Sbjct:  483 SGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMRGRTTFVIAHRLSTIRHATRILVFENGRVIESGTFDDLVAQRGHFAELARAQFMVQEDARASVAAAA 595          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QRVA+ARA L+  P+L+ DEATSALD+ +E  I +AL  L  N+T + IAHRL+T  + D+I+V+++G V+E+GSH +L+ K G YAQL
Sbjct:  482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIEKDGAYAQL 575          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_VIBCH (Lipid A export ATP-binding/permease protein msbA OS=Vibrio cholerae GN=msbA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QRVA+ARA L+  P+L+ DEATSALD+ +E  I  AL  L  N+T + IAHRL+T  Q DEI+V++ G++IE+G H DLL + G YAQL
Sbjct:  482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  201 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 485
            SGG++QR+A+ARA LK  P+L+ DEATSALDS +E  I  AL+ +   RT++ IAHRL+T  + D I+VL+ G++IEQGSH  LL K G Y Q++
Sbjct:  481 SGGQRQRIAIARALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKNGLYTQMY 575          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris GN=ndvA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.153e-22
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = -2
Query:  147 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVKLGA 485
            SGGE+QR+++ARA LK PPIL+ DEATSALD+ TEA++  AL  +   RT+  IAHRL+T      I+V +NGKVIE G+ D+L+ + G +AQL   Q    ++  +A+   A
Sbjct:  483 SGGERQRLSIARALLKDPPILILDEATSALDAVTEAKLNLALDEVMKGRTTFVIAHRLSTIRDATRILVFDNGKVIESGTFDELVARGGAFAQLARAQFMVQESARSAMSSAA 595          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_THICR (Lipid A export ATP-binding/permease protein msbA OS=Thiomicrospira crunogena (strain XCL-2) GN=msbA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.153e-22
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  189 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 485
            SGG++QR+A+ARAFLK  PIL+ DEATSALD+ +E  I  A+ SL  NRT I IAHRL+T    D+I+VLE G + EQG+H +L+     Y+QL+ Q N
Sbjct:  478 SGGQRQRLAIARAFLKNAPILIMDEATSALDNQSEKLIQEAMNSLRKNRTVIIIAHRLSTIENADKIVVLEEGSLKEQGTHAELMALNSIYSQLYKQGN 576          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_BURS31.262e-2255.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURCA1.262e-2255.32Lipid A export ATP-binding/permease protein msbA O... [more]
YGAD_BACSU1.648e-2250.51Putative multidrug export ATP-binding/permease pro... [more]
NDVA_RHOP51.648e-2249.54Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHOP21.648e-2248.67Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_VIBVY1.648e-2253.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBCH1.648e-2255.32Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS1.648e-2253.68Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_RHOPA2.153e-2247.79Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_THICR2.153e-2254.55Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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