DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  210 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYA 485
            SGG+KQR+A+ARA LK P +LL DEATSALDS +E+ + +AL+ L   RTS+ IAHRL+T  +CD I VLENG V+E G+H  LL K  + A
Sbjct: 1122 SGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGA 1213          

HSP 2 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQL 485
            SGG+KQR+A+ARA +K+P ILL DEATSALDS +E  +  AL + +  RT+I IAHRL+T    D I V+ NG++IE GSH++LL K  G+Y  L
Sbjct:  487 SGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSL 581          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  150 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNNTADAIDAAVKLG 485
            SGG+KQR+A+ARA +K+P ILL DEATSALDS +E  +  AL++ +  RT+I IAHRL+T    D I V++NG ++E GSHD+L+    G+Y+ L   Q      I+ +VK+G
Sbjct:  499 SGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQDINVSVKIG 611          

HSP 2 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = -2
Query:  225 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 485
            SGG+KQR+A+ARA LK P +LL DEATSALDS +E  + +AL+ +   RTS+ IAHRL+T   CD I VL+ GK++E+G+H  LL+K
Sbjct: 1137 SGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSK 1223          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHIL3 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ndvA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+A+ARA LK  PIL+ DEATSALD  TEA +  A+ +L  NRT+  IAHRL+T  + D ++ L++G+V+EQGS D+L    GR+A L
Sbjct:  473 SGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGSFDELSHSNGRFAAL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_BARQU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella quintana GN=ndvA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGEKQR+A+ARA LK  PIL+ DEATSALD  TEA + +AL  +++NRT+  IAHRL+T    D ++ LENG +IE+G+  +L+ K GR+ +L
Sbjct:  473 SGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRHADLVLFLENGHLIEKGNFQELIDKGGRFYKL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_HAHCH (Lipid A export ATP-binding/permease protein msbA OS=Hahella chejuensis (strain KCTC 2396) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = -2
Query:  174 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADA 485
            SGG++QR+ +ARA LK  PIL+ DEATSALD+  E  I +AL++L   RT++ +AHRL+T    D+I+V++ G+++E GSH +L+ K G YA L   Q + ADA
Sbjct:  482 SGGQRQRMVIARALLKDSPILILDEATSALDTHAERNIQSALETLMKGRTTLVVAHRLSTIENADKIVVMDQGRIVEVGSHRELIEKDGAYAALHKLQFSEADA 585          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURTA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL++L   RT++ IAHRL+T  + D I+VLE GK++E GSH +LL + G YA L
Sbjct:  493 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQGGLYAHL 586          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL++L   RT++ IAHRL+T  + D I+VLE GK++E GSH +LL + G YA L
Sbjct:  493 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQGGLYAHL 586          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL++L   RT++ IAHRL+T  + D I+VLE GK++E GSH +LL + G YA L
Sbjct:  493 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQGGLYAHL 586          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BURMA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia mallei GN=msbA PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E  +  AL++L   RT++ IAHRL+T  + D I+VLE GK++E GSH +LL + G YA L
Sbjct:  493 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQGGLYAHL 586          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ATM1_EMENI (Iron-sulfur clusters transporter atm1, mitochondrial OS=Emericella nidulans GN=atm1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = -2
Query:  183 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN--RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 485
            SGGEKQR+A++R  LK P +L  DEATSALD+ TE  ++  + S+     RTS+F+AHRL T   CD+I+VL++G+V E GSH +LL   G YA+LW  Q  +
Sbjct:  571 SGGEKQRLAISRLLLKDPQLLFFDEATSALDTYTEQALMQNINSILKEKGRTSVFVAHRLRTIYDCDQILVLKDGQVAELGSHRELLDLDGIYAELWSAQETS 673          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB18B_ARATH2.811e-2257.61ABC transporter B family member 18 OS=Arabidopsis ... [more]
AB15B_ARATH2.811e-2248.67ABC transporter B family member 15 OS=Arabidopsis ... [more]
NDVA_RHIL33.672e-2254.26Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARQU3.672e-2254.26Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_HAHCH3.672e-2249.04Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURTA3.672e-2254.26Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURPS3.672e-2254.26Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURP13.672e-2254.26Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURMA3.672e-2254.26Lipid A export ATP-binding/permease protein msbA O... [more]
ATM1_EMENI3.672e-2250.49Iron-sulfur clusters transporter atm1, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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