DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I   L +L  NRTS+ IAHRL+T    D+I+V++ G+++E+G+H  LL   G YA+L+  Q
Sbjct:  501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I   L +L  NRTS+ IAHRL+T    D+I+V++ G+++E+G+H  LL   G YA+L+  Q
Sbjct:  501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHEON (Lipid A export ATP-binding/permease protein msbA OS=Shewanella oneidensis GN=msbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I   L +L  NRTS+ IAHRL+T    D+I+V++ G+++E+G+H  LL   G YA+L+  Q
Sbjct:  501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA  K  PIL+ DEATSALD+ +E +I +AL  L   RT++ IAHRL+T    D I+V++NG+++E G+H  LL ++G YA L+  Q
Sbjct:  487 SGGQRQRIAIARALYKNAPILILDEATSALDNESEKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAGNHQTLLDRSGVYANLYHSQ 584          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_PSEA6 (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA L   P+L+ DEATSALD+ +E  I +AL++L  +RTSI +AHRL+T    D+I+V+E G+++EQG H  LL++ G YAQL
Sbjct:  480 SGGQRQRLAIARAVLLDAPVLILDEATSALDTESERLIQDALETLQQDRTSIVVAHRLSTIESADQILVIERGRILEQGDHASLLSEDGAYAQL 573          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD+ +E  I  AL  L  +RT++ IAHRL+T  + DEI+V+E+G++IE+G+H  LL   G YAQL   Q
Sbjct:  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKDRTALVIAHRLSTIEKADEILVVEDGRIIERGNHTALLATNGAYAQLHRMQ 579          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK--AGRYAQLWGQQ 485
            SGG+KQR+A+ARA LK P +LL DEATSALDS +E  + +AL+ +   RTSI IAHRL+T   CD I+VL  GK++E G+H  LL K   G Y  L G Q
Sbjct: 1137 SGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236          

HSP 2 Score: 97.8265 bits (242), Expect = 2.631e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQL 485
            SGG+KQR+A+ARA +K+P ILL DEATSALDS +E  +  +L + +  RT+I IAHRL+T    D I V+ NG+++E GSH++LL +  G+Y  L
Sbjct:  499 SGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSL 593          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: PMD1_SCHPO (Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+A+ARA +  P ILL DEATSALDS +E  +  AL + + +RT+I IAHRL+T    D I+V+  GK++EQGSH++LL   G YA+L
Sbjct:  569 SGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARL 662          

HSP 2 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG+KQR+A+ARA ++ P ILL DEATSALDS +E  +  AL + +  RT++ IAHRL++    D I V + G + E G+H +L+ + GRY +L  +Q
Sbjct: 1260 SGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYELVVEQ 1357          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_BARHE (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella henselae GN=ndvA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGEKQR+A+ARA LK  PIL+ DEATSALD  TEA + +AL  +++NRT+  IAHRL+T    D ++ LE G +IE+GS  +L+ K GR+ +L
Sbjct:  473 SGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRNADLVLFLEQGHLIEKGSFQELIAKGGRFYKL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA  K  PIL+ DEATSALDS +E ++  AL+SL   RT++ IAHRL+T    D I+VLE G+V EQGSH +L+ K G YA L
Sbjct:  492 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGSHAELIGKNGLYAGL 585          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_SHESR4.796e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHESM4.796e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHEON4.796e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SACD24.796e-2250.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEA64.796e-2253.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ERWCT4.796e-2253.06Lipid A export ATP-binding/permease protein msbA O... [more]
AB17B_ARATH4.796e-2255.00ABC transporter B family member 17 OS=Arabidopsis ... [more]
PMD1_SCHPO6.263e-2254.26Leptomycin B resistance protein pmd1 OS=Schizosacc... [more]
NDVA_BARHE6.263e-2254.26Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_RALME6.263e-2256.38Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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