DN617323
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ P+L+ DEATSALD+ +E I L +L NRTS+ IAHRL+T D+I+V++ G+++E+G+H LL G YA+L+ Q Sbjct: 501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ P+L+ DEATSALD+ +E I L +L NRTS+ IAHRL+T D+I+V++ G+++E+G+H LL G YA+L+ Q Sbjct: 501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SHEON (Lipid A export ATP-binding/permease protein msbA OS=Shewanella oneidensis GN=msbA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ P+L+ DEATSALD+ +E I L +L NRTS+ IAHRL+T D+I+V++ G+++E+G+H LL G YA+L+ Q Sbjct: 501 SGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA K PIL+ DEATSALD+ +E +I +AL L RT++ IAHRL+T D I+V++NG+++E G+H LL ++G YA L+ Q Sbjct: 487 SGGQRQRIAIARALYKNAPILILDEATSALDNESEKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAGNHQTLLDRSGVYANLYHSQ 584
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_PSEA6 (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=msbA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = -2 Query: 204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485 SGG++QR+A+ARA L P+L+ DEATSALD+ +E I +AL++L +RTSI +AHRL+T D+I+V+E G+++EQG H LL++ G YAQL Sbjct: 480 SGGQRQRLAIARAVLLDAPVLILDEATSALDTESERLIQDALETLQQDRTSIVVAHRLSTIESADQILVIERGRILEQGDHASLLSEDGAYAQL 573
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG++QR+A+ARA L+ PIL+ DEATSALD+ +E I AL L +RT++ IAHRL+T + DEI+V+E+G++IE+G+H LL G YAQL Q Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKDRTALVIAHRLSTIEKADEILVVEDGRIIERGNHTALLATNGAYAQLHRMQ 579
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22 Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK--AGRYAQLWGQQ 485 SGG+KQR+A+ARA LK P +LL DEATSALDS +E + +AL+ + RTSI IAHRL+T CD I+VL GK++E G+H LL K G Y L G Q Sbjct: 1137 SGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236 HSP 2 Score: 97.8265 bits (242), Expect = 2.631e-20 Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = -2 Query: 204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQL 485 SGG+KQR+A+ARA +K+P ILL DEATSALDS +E + +L + + RT+I IAHRL+T D I V+ NG+++E GSH++LL + G+Y L Sbjct: 499 SGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSL 593
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: PMD1_SCHPO (Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22 Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2 Query: 204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485 SGG+KQR+A+ARA + P ILL DEATSALDS +E + AL + + +RT+I IAHRL+T D I+V+ GK++EQGSH++LL G YA+L Sbjct: 569 SGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARL 662 HSP 2 Score: 92.8189 bits (229), Expect = 8.465e-19 Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = -2 Query: 192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485 SGG+KQR+A+ARA ++ P ILL DEATSALDS +E + AL + + RT++ IAHRL++ D I V + G + E G+H +L+ + GRY +L +Q Sbjct: 1260 SGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYELVVEQ 1357
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_BARHE (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella henselae GN=ndvA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22 Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = -2 Query: 204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485 SGGEKQR+A+ARA LK PIL+ DEATSALD TEA + +AL +++NRT+ IAHRL+T D ++ LE G +IE+GS +L+ K GR+ +L Sbjct: 473 SGGEKQRLAIARAVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRNADLVLFLEQGHLIEKGSFQELIAKGGRFYKL 566
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22 Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = -2 Query: 204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485 SGG++QR+A+ARA K PIL+ DEATSALDS +E ++ AL+SL RT++ IAHRL+T D I+VLE G+V EQGSH +L+ K G YA L Sbjct: 492 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGSHAELIGKNGLYAGL 585 The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bpback to top |