DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_DESPS (Lipid A export ATP-binding/permease protein msbA OS=Desulfotalea psychrophila GN=msbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+++ARA L   PIL+ DEATSALD+ +E E+  AL++L  NRT+  IAHRL+T      I+V++ GK++E+GSH++LL   G Y  L+  Q
Sbjct:  475 SGGQRQRISIARALLADAPILILDEATSALDTESEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVEEGSHEELLKLEGEYQLLYNMQ 572          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGG++QR+A+ARA LK  PIL+ DEATSALDS +E  I  AL+ L   RT++ IAHRL+T    D I+VL+ G+V+E G+H +LL   G YA L   Q N
Sbjct:  487 SGGQRQRIAIARALLKDAPILILDEATSALDSESEKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVLDAGRVVETGTHRELLDHNGHYASLHRVQFN 586          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QR+A+ARA LK  PIL+ DEATSALD+ +E  I  A      NRT+I IAHRL+T    D I+V++ G++IEQG+H +LL K G Y QL
Sbjct:  474 SGGQRQRIAIARAILKNAPILILDEATSALDNESEHFIQKAFDEAMQNRTTIVIAHRLSTIENADRIVVMDKGQIIEQGTHQELLLKQGAYFQL 567          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG+KQRVA+ARA ++ P +LL DEATSALD+ +E  +  AL +++  RTSI IAHRL+T +  D I+V++ GKV+E G+H+ LL + G YA+L  +Q
Sbjct: 1299 SGGQKQRVAIARAIIRNPKVLLLDEATSALDTVSEKVVQVALDNVSKGRTSIVIAHRLSTVIDADLIVVVKEGKVVELGTHETLLAENGFYAELVSRQ 1396          

HSP 2 Score: 97.0561 bits (240), Expect = 4.489e-20
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  156 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 485
            SGG+KQR+A+ARA +K P ILL DEATSALDS  E  +  +++ L   RT+I IAHRL+T    D+I V++ G ++E G+H +L    G Y QL  +Q    D  D   K
Sbjct:  614 SGGQKQRIAIARAMIKDPKILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYALNGVYTQLVNRQQKGGDDGDKKKK 723          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQ 485
            SGG+KQRVA+ARA LK P +LL DEATSALD++ E ++  AL  L   RT+I +AHRL+T  + D I+VL  GKV+E+GSH +L++K+ G Y +L   Q
Sbjct: 1146 SGGQKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244          

HSP 2 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG+KQR+A+ARA L+ P ILL DEATSALD+ +E  +  AL ++   RT+I IAHRL+T    D+I+VL +G+V E GSH +L+++ G YA L
Sbjct:  512 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATL 605          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_WIGBR (Lipid A export ATP-binding/permease protein msbA OS=Wigglesworthia glossinidia brevipalpis GN=msbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 48/98 (48.98%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  PIL+ DEATSALD  +E ++  A+  +  NRTS+ IAHR++T  + D I+++E GK+IE G+H++L+ K G YAQ++  Q
Sbjct:  481 SGGQRQRIAIARALLRDCPILILDEATSALDIESEIKVQKAIDKIRKNRTSLVIAHRISTIKKSDMILLVEKGKIIEYGNHNELIEKKGVYAQIYRLQ 578          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_VIBPA (Lipid A export ATP-binding/permease protein msbA OS=Vibrio parahaemolyticus GN=msbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QRVA+ARA L+  P+L+ DEATSALD+ +E  I  AL  L  ++T + IAHRL+T  + DEI+V+++G +IE+G+H DL+ K G YAQL
Sbjct:  482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKDKTVLVIAHRLSTIEKADEILVVDDGAIIERGNHADLIAKNGAYAQL 575          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA +K  PIL+ DEATSALD+ +E ++ ++L  L   RT++ IAHRL+T    D IIVL+ G+++E G+H +LL   G YA L+  Q
Sbjct:  490 SGGQRQRLAIARALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLAAGGLYATLYNMQ 587          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: NDVA_RHIEC (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndvA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGGE+QR+A+ARA LK  PIL+ DEATSALD  TEA +  A+ +L  NRT+  IAHRL+T  + D ++ L++G+V+EQG  D+L    GR+A L
Sbjct:  473 SGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGGFDELSHSNGRFAAL 566          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_PHOLL (Lipid A export ATP-binding/permease protein msbA OS=Photorhabdus luminescens subsp. laumondii GN=msbA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.068e-21
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA L+  P+L+ DEATSALD+ +E  I  AL  L  NRTS+ IAHRL+T    DEI+V+E+G ++E+G H  LL + G Y+QL   Q
Sbjct:  481 SGGQRQRIAIARALLRDSPVLILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIENADEILVVEDGHIVERGDHLSLLERNGVYSQLHRMQ 578          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_DESPS6.263e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALHEH6.263e-2253.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ACIAD6.263e-2254.26Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB2_DICDI6.263e-2252.04ABC transporter B family member 2 OS=Dictyostelium... [more]
AB14B_ARATH6.263e-2253.54ABC transporter B family member 14 OS=Arabidopsis ... [more]
MSBA_WIGBR8.180e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_VIBPA8.180e-2253.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORA18.180e-2248.98Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_RHIEC1.068e-2153.19Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_PHOLL1.068e-2152.04Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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