CX043796

Overview
NameCX043796
Unique NameCX043796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.273e-54
Identity = 104/178 (58.43%), Postives = 148/178 (83.15%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK I F + +R A++ GI++L+DAV +T+GP+GRNV+L++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVA+KTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LVE++  +A+P+EGR +I  VATISAGND  +G MIA A+D VG DGV+++E S
Sbjct:    2 AKQILFREEARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEES 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.063e-54
Identity = 107/179 (59.78%), Postives = 145/179 (81.01%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +AKDI + + +R AM+ G++ L+DAV +TLGP+GRNVVL++ FGSP +VNDGVTIAR IEL +P EN GA L++EVA+KTND AGDGTTTA+VLA+ I++ GL +VT+GANP+ LKRGI+K V   VEE++ RA+P+E ++ I  VA+ISA ND  IG +IADA++KVG DGV+++E S
Sbjct:    2 AAKDIVYREDARTAMERGVNALADAVRVTLGPKGRNVVLEKKFGSPMIVNDGVTIAREIELENPFENMGAQLVKEVATKTNDIAGDGTTTAAVLAQAIVRAGLKNVTAGANPMILKRGIEKAVERTVEEIKSRAKPVESKEAITQVASISA-NDTTIGNLIADAMEKVGKDGVITVEES 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.613e-54
Identity = 105/178 (58.99%), Postives = 143/178 (80.34%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK + FD+ +R A++ GID L++AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL + +EN GA LI+EVASKTND AGDGTTTA VLA+ ++K GL +V +G+NP++LKRG++KTV  LV ELEK A+P+EG   I  VA +SAGNDD IG MIA A++ VG +GV+++E S
Sbjct:    2 AKQVVFDETARRALERGIDALANAVRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKEVASKTNDVAGDGTTTACVLAQSLVKEGLKNVAAGSNPMNLKRGMEKTVRHLVAELEKVAKPVEGSQAIAQVAAVSAGNDDEIGEMIARAMETVGKEGVITVEES 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.473e-53
Identity = 105/178 (58.99%), Postives = 144/178 (80.90%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK I+FD+ SR A++ G++ L+DAV +TLGP+GRNV+L++ +G+P++VNDG+T+A+ IEL DP+EN GA LI+EVASKT D AGDGTTTA+VL + +IK GL +V +G NPVSLKRGIDKT   LVEE+ K A+P+EG   I  VAT+SAGND+ +G MIA+A+++V  DGV+++E S
Sbjct:    2 AKIISFDEESRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIKEGLKNVAAGINPVSLKRGIDKTTEALVEEIAKVAKPVEG-SAIAQVATVSAGNDEEVGGMIAEAVERVTKDGVITVEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_LEPIN (60 kDa chaperonin OS=Leptospira interrogans GN=groL PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.282e-53
Identity = 102/178 (57.30%), Postives = 142/178 (79.78%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI +++ +R  +  G++KL++AV +TLGP+GRNVV+D+ FG+P +  DGVT+A+ IEL DP+EN GA +++EV++KTND AGDGTTTA++LA+ II  GL +VT+GANP+SLKRGIDK V   VE ++KRA  IE + DI  VA+ISA ND+ IG +IADA+DKVG DGV+++E +
Sbjct:    2 AKDIEYNETARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDPLENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIQKRAVKIENKKDIANVASISANNDNTIGNLIADAMDKVGKDGVITVEEA 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.286e-53
Identity = 104/178 (58.43%), Postives = 142/178 (79.78%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK + FD+ +R A++ GI KL++AV +TLGPRGRNVVL++ FG+P + NDGVTIA+ +EL DP+EN GA L+REVASKTND AGDGTTTA VLA+ I++ G+ +V +GANP+ +KRGI+K V  +VE L+ +ARP+E +D I  VA+ISA ND  IG ++ADA++KVG DGV+++E S
Sbjct:    2 AKQVVFDREAREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASISA-NDPQIGALVADAMEKVGKDGVITVEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.286e-53
Identity = 104/178 (58.43%), Postives = 143/178 (80.34%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK I+FD+ SR A++ G++ L+DAV +TLGP+GRNV+L++ +G+P++VNDG+T+A+ IEL DP+EN GA LI+EVA+KT D AGDGTTTA+VL + +IK GL +V +G+NPVSLKRGIDKT   LV E+ K A+P+EG   I  VAT+SAGND+ +G MIA A++KV  DGV+++E S
Sbjct:    2 AKIISFDEESRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEG-SAIAQVATVSAGNDEEVGAMIAQAVEKVTKDGVITVEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 108/179 (60.34%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +AK I FD+ +R  +QAG+D L++ V +TLGPRGRNVVLD+ FG+P V NDGVTIAR IEL DP EN GA L++EVA+KTND AGDGTTT++VLA+ I+K GL +VT GANP+ LKRGI+K V   VEEL K+A P+E    I  VA ISA ND  IG ++A A+D VG DGV+++E S
Sbjct:    2 TAKQIIFDEAARRKLQAGVDALANTVKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTSTVLAQAIVKEGLKNVTGGANPMILKRGIEKAVQVAVEELRKQAIPVETNKAIAEVAAISANNDREIGELVAKAMDTVGKDGVITVEES 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_LEPIC (60 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groL PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 101/178 (56.74%), Postives = 142/178 (79.78%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI +++ +R  +  G++KL++AV +TLGP+GRNVV+D+ FG+P +  DGVT+A+ IEL DP+EN GA +++EV++KTND AGDGTTTA++LA+ II  GL +VT+GANP+SLK+GIDK V   VE ++KRA  IE + DI  VA+ISA ND+ IG +IADA+DKVG DGV+++E +
Sbjct:    2 AKDIEYNETARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDPLENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKKGIDKAVTAAVESIQKRAVKIENKKDIANVASISANNDNTIGNLIADAMDKVGKDGVITVEEA 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_LEPBL (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 102/178 (57.30%), Postives = 140/178 (78.65%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI +++ +R  +  G++KL++AV +TLGP+GRNVV+D+ FG+P +  DGVT+A+ IEL D +EN GA +++EV++KTND AGDGTTTA++LA+ II  GL +VT+GANP+SLKRGIDK V   VE + KRA  IE + DI  VA+ISA NDD IG +IADA+DKVG DGV+++E +
Sbjct:    2 AKDIEYNETARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIRKRAVKIENKKDIANVASISANNDDTIGNLIADAMDKVGKDGVITVEEA 179          
The following BLAST results are available for this feature:
BLAST of CX043796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNJA2.273e-5458.4360 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH60_DESAP5.063e-5459.7860 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH601_GLOVI6.613e-5458.9960 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANASL1.473e-5358.9960 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH60_LEPIN3.282e-5357.3060 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH602_MOOTA4.286e-5358.4360 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH602_ANAVT4.286e-5358.4360 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH60_SYMTH7.311e-5360.3460 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_LEPIC7.311e-5356.7460 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH60_LEPBL1.247e-5257.3060 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043796 ID=CX043796; Name=CX043796; organism=Citrus sinensis; type=EST; length=729bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACGCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATCAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCA
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