CX043796
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 3.252e-85 Identity = 164/184 (89.13%), Postives = 175/184 (95.11%), Query Frame = 1 Query: 178 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV L+EELEKRARP++G DIKAVATISAGND+L+GTMIADAIDKVGPDGVLSIESSS Sbjct: 2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSS 185
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 314.309 bits (804), Expect = 4.247e-85 Identity = 162/184 (88.04%), Postives = 177/184 (96.20%), Query Frame = 1 Query: 178 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVLSIESSS Sbjct: 42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSS 225
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 313.923 bits (803), Expect = 5.546e-85 Identity = 163/184 (88.59%), Postives = 176/184 (95.65%), Query Frame = 1 Query: 178 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV LVEELEK ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDGVLSIESS+ Sbjct: 43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSN 226
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 6.780e-83 Identity = 161/184 (87.50%), Postives = 172/184 (93.48%), Query Frame = 1 Query: 178 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV L+EELEKR+RP++G DIKAVATISAGND+LIG MIADAIDKVGPDGV IESSS Sbjct: 41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSS 224
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 301.982 bits (772), Expect = 2.181e-81 Identity = 154/180 (85.56%), Postives = 173/180 (96.11%), Query Frame = 1 Query: 190 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 A AK+IAFDQ SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ARP++G DIKAVA+ISAGND+LIG MIADAIDKVGPDGVLSIESSS Sbjct: 2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSS 181
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 6.346e-81 Identity = 154/168 (91.67%), Postives = 165/168 (98.21%), Query Frame = 1 Query: 226 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ARP++GRDDIKAVA+ISAGND+LIGTMIADAIDKVGPDGVLSIESSS Sbjct: 1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSS 168
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 6.375e-65 Identity = 125/181 (69.06%), Postives = 158/181 (87.29%), Query Frame = 1 Query: 190 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729 A AK+I FDQ SR +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I GL SVT+GANP+++KRG+DKT LV +L++ A+P++GRDDIK VA+ISAGND+ IG MIADA+DKVG +GVLSIE+S+ Sbjct: 34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSN 214
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.859e-56 Identity = 108/178 (60.67%), Postives = 148/178 (83.15%), Query Frame = 1 Query: 196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726 AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+ LV+E+E +++P+ G D I VATISAGND +G MIA A+DKVG DGV+++E S Sbjct: 2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEES 178
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55 Identity = 109/178 (61.24%), Postives = 146/178 (82.02%), Query Frame = 1 Query: 196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726 AK I FD+ +R A++ G++ L+DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV LV+E+ A+P+E I VATIS+GND+ IG MIA+A+DKVG +GV+++E S Sbjct: 2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEES 179
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.020e-54 Identity = 105/178 (58.99%), Postives = 146/178 (82.02%), Query Frame = 1 Query: 196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726 AK I F + +R A++ GI++L+DA+ +T+GP+GRNVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT LVE++ A+P+EGR I VATISAGND +G MIA A+D VG DGV+++E S Sbjct: 2 AKRILFREEARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEES 179 The following BLAST results are available for this feature:
BLAST of CX043796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043796 ID=CX043796; Name=CX043796; organism=Citrus sinensis; type=EST; length=729bpback to top |