CX043796

Overview
NameCX043796
Unique NameCX043796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 98/178 (55.06%), Postives = 138/178 (77.53%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK+I F + +R+AM +G+DKL+D V  T+GP+GRNVVL++ +G+P + NDGVTIA++IEL +  EN GA L+ EVASKTND AGDGTTTA+VL + I+  G+ +VTSGANPV ++RGIDK     VE L+K +  ++ +DDI+ +A+ISA N + +G +IADA++KVG DGV++IE S
Sbjct:    2 AKEIKFSEDARSAMLSGVDKLADTVKTTMGPKGRNVVLEQSYGTPTITNDGVTIAKSIELENQFENMGAKLVAEVASKTNDIAGDGTTTATVLTQAIVNAGMKNVTSGANPVGIRRGIDKATEVAVEALKKMSHDVKTKDDIEQIASISAANPE-VGKLIADAMEKVGHDGVITIEDS 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 100/179 (55.87%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IELAD +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+++E +
Sbjct:    2 TAKDIIFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVLELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEA 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_SACEN (60 kDa chaperonin 2 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL2 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 98/179 (54.75%), Postives = 139/179 (77.65%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729
            AK IAFD+ +R A++ G+++L+DAV +TLGPRGR+VVLD +FG P+V NDGVTIAR IEL DP EN GA L + VA+KTND AGDGTTTA+VLA+ +++ GL ++ +GANP +L RGI      +V+ L+ +A P++GRD+I  +AT+S+  D+ IG ++ +A+++VG DGV+SIE SS
Sbjct:    2 AKQIAFDEQARRALERGVNQLADAVKVTLGPRGRHVVLDKQFGGPQVTNDGVTIAREIELEDPYENLGAQLAKNVATKTNDVAGDGTTTATVLAQAMVREGLRNLAAGANPTALGRGIQAATDAVVDALKAKATPVKGRDNIAQIATVSS-RDESIGALVGEAMERVGEDGVISIEESS 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 101/177 (57.06%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            +AK IAFD+ +R+ +  G+ KLS AV  TLGP+GR VVL+ +FGSP + NDGVTIA+ I+L DP EN GA L +EVASKTND AGDGTTTA+VLA  +++ G+ +VT+GANP++L+RGI+K V  + EE++K +RP+ G+ DI  VATISA  D  IG++IA+A++KVG DGV+++E
Sbjct:    2 AAKLIAFDEEARSKLLTGVLKLSKAVKATLGPKGRYVVLERKFGSPLITNDGVTIAKEIDLEDPYENLGAQLAKEVASKTNDVAGDGTTTATVLAEAMVREGMKNVTAGANPIALRRGIEKAVEAVTEEIKKLSRPVSGKRDITEVATISA-KDQQIGSIIAEAMEKVGKDGVVTVE 177          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 97/178 (54.49%), Postives = 140/178 (78.65%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK I F + SR A++ G++ L++AV +TLGPRGRNV+L++ FG+P+++NDGV+IA+ IEL DP ENAGA L++EVA+KT + AGDGTTTA+VLA+ I++ GL +V +GANP+ L+RGI+K V  LVE +  +A+P+     I+++A +SAGNDD +G MIADA+ KV  DGV+++E S
Sbjct:    2 AKLILFHEDSRQALERGVNALANAVKVTLGPRGRNVLLEKKFGAPEIINDGVSIAKEIELEDPHENAGARLVQEVAAKTKEIAGDGTTTATVLAQAIVREGLTNVAAGANPIVLRRGIEKAVATLVEAIAAKAQPVADEAAIRSIAAVSAGNDDEVGQMIADAVAKVTKDGVITVEES 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 96/176 (54.55%), Postives = 139/176 (78.98%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ ++PI   + I    TI+AGNDD +G MIA+A+DKVG +GV+S+E
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIQENSKPISDSNAIAQCGTIAAGNDDEVGQMIANAMDKVGKEGVISLE 177          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_PROM0 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.201e-49
Identity = 96/176 (54.55%), Postives = 139/176 (78.98%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++ ++PI   + I    TI+AGNDD +G MIA+A+DKVG +GV+S+E
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIQENSKPISDSNAIAQCGTIAAGNDDEVGQMIANAMDKVGKEGVISLE 177          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 100/177 (56.50%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            K I + + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ I L D +EN G +LIR+ ASKTND AGDGTTTA+VLA  IIK G+ +V +GANP+ LKRGI+K    +V ++   ARPIE   DI  VA ISAGND  +G++IA+AIDKVG +G++S+E S
Sbjct:    4 KTILYQEDARKALERGMDILAEAVSVTLGPKGRNVVLEKKFGTPQIVNDGVTIAKEINLQDTLENTGVSLIRQAASKTNDVAGDGTTTATVLAYAIIKQGMRNVAAGANPIVLKRGIEKATQFVVRKIMDYARPIENLTDITQVAQISAGNDAEVGSLIANAIDKVGREGLISLEES 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 101/179 (56.42%), Postives = 141/179 (78.77%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 729
            AK I F + SR AMQAG+DKL++AV +TLGP+GRNVVLD+ FG+P + NDGVTIA+ IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ +++GI   V   VE+++K ++ ++G++DI  VA ISA  D  IG +IADA++KVG +GV+++E S+
Sbjct:    2 AKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGAPLITNDGVTIAKEIELEDMYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVDGKEDIARVAAISAA-DPEIGKLIADAMEKVGNEGVITVEESN 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 94/175 (53.71%), Postives = 138/175 (78.86%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            K I +   +R  ++ G D L++AV +TLGP+GRN+VL++ FG+P++VNDGVTIA+ IEL DP EN G +L+R+ ASKTND AGDGTTTA VLA  ++K GL +VT+GA+P+++KRGIDK    ++E++++ ARPI+   DI+ VATISAGND  +G ++A+A+++VG +GV+S+E
Sbjct:    3 KTILYKDTARWTLEKGFDALTEAVAVTLGPKGRNIVLEKKFGAPQIVNDGVTIAKEIELEDPAENTGISLLRQAASKTNDVAGDGTTTAIVLAHAMLKEGLRNVTAGADPLTVKRGIDKATEFVIEKIQEHARPIKDSRDIEQVATISAGNDPEVGRIVAEAMERVGKEGVISLE 177          
The following BLAST results are available for this feature:
BLAST of CX043796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACRD1.686e-4955.0660 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_CHLPD1.686e-4955.8760 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH602_SACEN1.686e-4954.7560 kDa chaperonin 2 OS=Saccharopolyspora erythraea... [more]
CH60_COPPD2.201e-4957.0660 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH602_SYNP62.201e-4954.4960 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH602_PROM92.201e-4954.5560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM02.201e-4954.5560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_EMIHU2.875e-4956.5060 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH60_CLONN2.875e-4956.4260 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH603_ANAVT2.875e-4953.7160 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043796 ID=CX043796; Name=CX043796; organism=Citrus sinensis; type=EST; length=729bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACGCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATCAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCA
back to top