CX043796

Overview
NameCX043796
Unique NameCX043796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 99/178 (55.62%), Postives = 141/178 (79.21%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV++IE S
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.875e-49
Identity = 99/178 (55.62%), Postives = 141/178 (79.21%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK +AF + SR +++ GI+ L+DAV +TLGP+GRNVVL++ +G+P++VNDGVTIA+ IEL D  EN GA L+REVA+KTND  GDGTTTA+VLA+ +I+ GL +V +G NP++LKRG++K +  +V+ + + A+P+EG D I  VAT+SAGND  +G MI++A+ KVG DGV++IE S
Sbjct:    2 AKLVAFHEESRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEG-DMIAQVATVSAGNDPEVGAMISEAMAKVGKDGVITIEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49
Identity = 99/178 (55.62%), Postives = 139/178 (78.09%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +K+I F + +R A++ G+D L++AV +TLGP+GRNVVLD +FGSP + NDGVTIAR I+L DP EN G  L++EVA KTND AGDGTTTA++LA+ +IK GL +V +GANP+ ++RGID+ V  +V+E++  ++P+E RD I  VA ISA +D  IG +IADA++KVG DGV+++E S
Sbjct:    3 SKEIKFGEEARRALERGVDTLANAVKVTLGPKGRNVVLDRKFGSPTITNDGVTIARDIDLKDPWENLGCQLVKEVAIKTNDVAGDGTTTATLLAQAMIKEGLKNVAAGANPMIMRRGIDQAVKAVVDEIKTLSKPVESRDSIAQVAAISA-DDPEIGQLIADAMEKVGRDGVITVEES 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49
Identity = 102/178 (57.30%), Postives = 138/178 (77.53%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI F + +R AM  G+D L+DAV +T+GP+GRNVVL+ +FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTN+ AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL   A+PIEG++ I  VA ISA  D+ +G +IA+A+++VG DGV++IE S
Sbjct:    2 AKDILFSEEARRAMLRGVDALADAVKVTIGPKGRNVVLERKFGSPLITNDGVTIAKEIELEDHFENMGAKLVAEVASKTNEIAGDGTTTATVLAQAMIREGLKNVTAGANPMVIRKGIEKAVRRAVEELHAIAKPIEGKEAIAQVAAISAA-DEEVGQLIAEAMERVGQDGVITIEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49
Identity = 101/178 (56.74%), Postives = 141/178 (79.21%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI F + +R +M  G+D L+DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV +++GI++ V   VE L++ ++PIEG++ I  VA+ISA  D+ +G++IA+A+++VG DGV++IE S
Sbjct:    2 AKDIKFSEEARRSMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGIEQAVAVAVESLKEISKPIEGKESIAQVASISAA-DEEVGSLIAEAMERVGNDGVITIEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49
Identity = 97/179 (54.19%), Postives = 132/179 (73.74%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +AKD+ F   +R  M  G+D L++AV +TLGP+GRNVV+D+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKTND+AGDGTTTA+VL + I+K G  +V SG NP+ LKRGIDK V  +VEEL+K AR +   D+I  V TISA  D  IG  +A A++KVG +GV+++E +
Sbjct:    2 AAKDVKFHSDARERMLRGVDVLANAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDAAGDGTTTATVLTQAIVKEGAKAVASGMNPMDLKRGIDKAVEAIVEELKKNARKVTKNDEIAQVGTISANGDQEIGRFLAQAMEKVGNEGVITVEEA 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+++E S
Sbjct:    3 KLLKFNEEARRALERGVDKVANAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKKLSGREDIAHVAAISA-NSPEIGELIAEAMDKVGEDGVITVEDS 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 97/178 (54.49%), Postives = 141/178 (79.21%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK ++F   SR+A++ G+D L+DAV +T+GPRGRNVVL++ FG+P +VNDG TIAR IEL DP EN GA LI++VAS+T D AGDGTTTA+VLA+ +++ GL +  +GA+PV L+RG++K V  +V+ L++R++P+ G D I+ VAT+S+G DD +G MIA+A+D+V  DGV+++E S
Sbjct:    2 AKLLSFSDESRSALERGVDALADAVRVTIGPRGRNVVLEKKFGAPDIVNDGDTIAREIELDDPFENLGAKLIQQVASRTKDKAGDGTTTATVLAQAMVREGLRNTAAGASPVELRRGMEKAVAQVVDGLQQRSQPVAG-DAIRQVATVSSGGDDEVGRMIAEAMDRVSADGVITVEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 96/176 (54.55%), Postives = 138/176 (78.41%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++E+ ++PI     I    TI+AGND+ +G MIA+A+DKVG +GV+S+E
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIEENSKPISDSTAIAQCGTIAAGNDEEVGEMIANAMDKVGKEGVISLE 177          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 96/176 (54.55%), Postives = 138/176 (78.41%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++E+ ++PI     I    TI+AGND+ +G MIA+A+DKVG +GV+S+E
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATEFLVGKIEENSKPISDSTAIAQCGTIAAGNDEEVGEMIANAMDKVGKEGVISLE 177          
The following BLAST results are available for this feature:
BLAST of CX043796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_THEVL2.875e-4955.6260 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB2.875e-4955.6260 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_SYNWW3.755e-4955.6260 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_EXIS23.755e-4957.3060 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_BACLD3.755e-4956.7460 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH602_MESSB3.755e-4954.1960 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH60_THENE4.904e-4956.5060 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH602_SYNPX4.904e-4954.4960 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_PROMP4.904e-4954.5560 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_PROM54.904e-4954.5560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043796 ID=CX043796; Name=CX043796; organism=Citrus sinensis; type=EST; length=729bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACGCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATCAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCA
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