CX043796

Overview
NameCX043796
Unique NameCX043796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+++E S
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDS 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+++E S
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDS 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  199 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            K + F++ +R A++ G+DK+++AV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK GL +V +GANP+ LKRGIDK V   VEE++K ++ + GR+DI  VA ISA N   IG +IA+A+DKVG DGV+++E S
Sbjct:    3 KILKFNEEARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVGEDGVITVEDS 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 98/179 (54.75%), Postives = 140/179 (78.21%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDD-IKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNVVL + FG P+V  DGV++A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP+ LKRGIDK V  +V +L+K++R + G ++ IK VA+ISA ND+ IG +I+ A DKVG +GV+++E +
Sbjct:    2 AKNIQFDIEARDKLKKGVDALANAVKVTLGPKGRNVVLQKSFGGPQVTKDGVSVAKEIELEDPIENLGAQMVKEVASKTNDIAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAVVNDLKKQSREVGGSNEKIKQVASISANNDEAIGELISVAFDKVGKEGVITVEEA 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 98/178 (55.06%), Postives = 136/178 (76.40%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK I + + SR A+  G+++L+DAV +TLGP+GRNVVL++ FG P +  DGVT+A+ IEL DP+EN GA ++REVASKT+D AGDGTTTA++LA+ I + G+ +V +GANP++LKRGIDK V    EE++K ++P+ G D I  V TISA +D  IG +IADA+ KVG DGV+++E S
Sbjct:    2 AKQIVYSEASRQAILRGVNQLADAVKVTLGPKGRNVVLEKKFGGPTITKDGVTVAKEIELKDPLENMGAQMVREVASKTSDVAGDGTTTATILAQSIYREGVKAVAAGANPMALKRGIDKAVELATEEVKKLSKPVSG-DMIAQVGTISANSDKTIGNIIADAMKKVGKDGVITVEES 178          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 98/179 (54.75%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ +EL D +EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+++E +
Sbjct:    2 TAKDILFDADARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEVELEDAIENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRTISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEA 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_ODOSI (60 kDa chaperonin, chloroplastic OS=Odontella sinensis GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 97/176 (55.11%), Postives = 138/176 (78.41%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIE 720
            AK I +   +R A++ G++ + +AV +TLGP+GRNVVL++ +GSP++VNDGVTIA+ I L D +EN G ALIR+ ASKTND AGDGTTTA+VLA  ++K GL +VT+GANP+S+K G++K    LV ++ + A+P+E    I+ VA+ISAGND+LIG++IADA+ KVG +GV+S+E
Sbjct:    2 AKKILYQDNARRALERGMEIMVEAVSVTLGPKGRNVVLEKPYGSPQIVNDGVTIAKEINLEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAMVKEGLKNVTAGANPISIKLGMEKATQYLVTQINEFAQPVEDIQSIEQVASISAGNDNLIGSLIADALSKVGKEGVISLE 177          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 99/179 (55.31%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  193 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            SAKDI FD  +RA ++ G+DKL+DAV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL D  EN GA ++REV+SKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGIDK V  ++ EL   +  I G+ +I  V TISA ND  IG +IADA++KVG DGV+++E +
Sbjct:    2 SAKDILFDASARAKLKVGVDKLADAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELEDSFENMGAQMVREVSSKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDKAVKEVIGELRTISNDISGKIEIAQVGTISANNDPEIGQLIADAMEKVGKDGVITVEEA 180          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 94/178 (52.81%), Postives = 135/178 (75.84%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK+I F   +R  + +G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ IEL D +EN GA L+REVASKTND AGDGTTTA+VLA  I K GL ++T+GANP+ +KRG+DK V  +  EL+  A+ ++G+ +I  VATISA +D  IG +IA+A++KVG DGV+++E +
Sbjct:    2 AKEIIFADDARNRLYSGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEIELKDTIENMGAGLVREVASKTNDEAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKFVEAVTSELKSAAKKVDGKKEIAQVATISANSDSSIGDLIAEAMEKVGKDGVITVEEA 179          
BLAST of CX043796 vs. ExPASy Swiss-Prot
Match: CH60_BACHK (60 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 101/178 (56.74%), Postives = 138/178 (77.53%), Query Frame = 1
Query:  196 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AKDI F + +R +M  G+D L++AV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ L++GI+K V   VEEL+  ++PIEG+  I  VA ISA  D+ +G +IA+A+++VG DGV+++E S
Sbjct:    2 AKDIKFSEEARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEES 178          
The following BLAST results are available for this feature:
BLAST of CX043796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THESQ8.365e-4956.5060 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP18.365e-4956.5060 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA8.365e-4956.5060 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_SULMW8.365e-4954.7560 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_SOLUE8.365e-4955.0660 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_PROVI8.365e-4954.7560 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_ODOSI8.365e-4955.1160 kDa chaperonin, chloroplastic OS=Odontella sine... [more]
CH60_CHLPB8.365e-4955.3160 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_CAMFF8.365e-4952.8160 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_BACHK8.365e-4956.7460 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D12-H23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043796 ID=CX043796; Name=CX043796; organism=Citrus sinensis; type=EST; length=729bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACGCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATCAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCA
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