DC887852
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12 Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = -3 Query: 213 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 548 +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 59 AFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12 Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = -3 Query: 213 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 548 +FGIR+ I C VT+R + A + + + L + E L F TG FGI+EH D G+ YDP+ GIYGMD VVLE +V KE+A+ + Y Sbjct: 51 AFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12 Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = -3 Query: 192 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 548 +FGIR+ I VT+RG A + L + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 59 AFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12 Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = -3 Query: 204 RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 551 R FG+R+ E I VT+RG+ A L + K ++ R+F D G F FGI EHID+ GIKYDP GI G+D + L G HR+T +A K F V+ GV Sbjct: 51 RDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12 Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = -3 Query: 198 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 548 SFGIRR + I V +R ++A++ L+ L + EL F + G FG++EHI L G++YDP GI+GMD V LE +HR+TKE+ + + + +++ +L Sbjct: 68 SFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12 Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = -3 Query: 234 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXGIQHRVTKEDAM 554 +R+FG+R+ E IA VT+RG+KA+ L+ L + + + + G FGI+EHI + G+KYDP GI GMD + ++ +HRVT+E+ M Sbjct: 72 IRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12 Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = -3 Query: 192 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 548 ++GIR+ I VT+RG A + L++ K L +F G F FG+ EHID G KYDPS GIYGMD V + +H VTK++A+++ Q K++ ++ + Sbjct: 59 AYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11 Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = -3 Query: 204 RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 551 R +G+R+ E I VT+RGD A LL+ L+ K + R F + G + FGI+EHID+ G+KY+PS GI G+ V L G H +T ++A K + VK GV Sbjct: 55 RDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11 Identity = 37/120 (30.83%), Postives = 59/120 (49.17%), Query Frame = -3 Query: 198 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 554 +R FG+R+ I T+R A++ L+ L + L + +F + G FGI EH+ + G +YDP GI+GMD + L +HRVTKE+A+ + + + IL Sbjct: 57 IREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKASIPRRHRVTKEEAINFMKENFNVTIL 176
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11 Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = -3 Query: 210 FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 545 FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 60 FGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170 The following BLAST results are available for this feature:
BLAST of DC887852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887852 ID=DC887852; Name=DC887852; organism=Citrus sinensis; type=EST; length=556bpback to top |