DC887852

Overview
NameDC887852
Unique NameDC887852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = -3
Query:  213 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 548
            +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   59 AFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = -3
Query:  213 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 548
            +FGIR+   I C VT+R + A + + + L + E  L    F  TG   FGI+EH D  G+ YDP+ GIYGMD  VVLE                    +V KE+A+ +    Y
Sbjct:   51 AFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = -3
Query:  192 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 548
            +FGIR+   I   VT+RG  A + L +     K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   59 AFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = -3
Query:  204 RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 551
            R FG+R+ E I   VT+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIKYDP  GI G+D  + L                 G  HR+T  +A K F V+  GV
Sbjct:   51 RDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = -3
Query:  198 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 548
            SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LE                  +HR+TKE+ + + + +++  +L
Sbjct:   68 SFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = -3
Query:  234 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXGIQHRVTKEDAM 554
            +R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++                   +HRVT+E+ M
Sbjct:   72 IRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  192 SFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 548
            ++GIR+   I   VT+RG  A + L++     K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  +                  +H VTK++A+++ Q K++  ++ +
Sbjct:   59 AYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = -3
Query:  204 RSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 551
            R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L                 G  H +T ++A K + VK  GV
Sbjct:   55 RDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 37/120 (30.83%), Postives = 59/120 (49.17%), Query Frame = -3
Query:  198 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 554
            +R FG+R+   I    T+R   A++ L+  L    + L + +F + G   FGI EH+ + G +YDP  GI+GMD  + L                   +HRVTKE+A+ + +  +   IL
Sbjct:   57 IREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKASIPRRHRVTKEEAINFMKENFNVTIL 176          
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = -3
Query:  210 FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 545
            FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   60 FGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
The following BLAST results are available for this feature:
BLAST of DC887852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL5_METVA2.141e-1237.0750S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METMJ2.141e-1236.2850S ribosomal protein L5P OS=Methanoculleus marisn... [more]
RL5_METM62.141e-1234.9650S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_CENSY2.141e-1239.3250S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]
RL5_METKA2.797e-1233.9050S ribosomal protein L5P OS=Methanopyrus kandleri... [more]
RL5_AERPE6.230e-1234.8650S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_METM58.137e-1233.3350S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_NITMS3.092e-1137.6150S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_SULAC5.274e-1130.8350S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_HALSA8.996e-1134.5150S ribosomal protein L5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionDC887852 EIC Citrus sinensis cDNA clone EIC0997 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887852 ID=DC887852; Name=DC887852; organism=Citrus sinensis; type=EST; length=556bp
GCCTTTACCATTATTCTAATAAAAGAACAGGGCAACCACGGCAAATTGTG
CTTAAAAAAAATCCACCAACTCAAAACTCCAAAGGAAAATATAGATTCTA
ATAAACAAAAATCGGGCAGCTGCCCAAAACTTAAGGGAAAAAAAAAACTC
AACAGGTTTCAAAGATCGCCTTAAGCACCAATGTTTTGGGACTTGTTAAG
GATAACTCCTTCATATTTCACTTGAAACCATTTCATGGCATCCTCCTTTG
TAACTCTATGTTGGATGCCAACGCGAGACTTGCATCTGCGGCGACGACCA
ACACGGTATCCAGGGCGTTCAAGGACAACAAAGAAGTCCATGCCATAAAT
ACCTGTGGAAGGGTCATACTTGATTCCGAGATCGATGTGCTCCTGAATGC
CAAAGCCGAAGCAGCCGGTATCGCTGAAGTTACGCCGCAGGAGCTCGTAC
TCCTTGACCTTCAAACCGCTCTCCAGAAGCTGCATTGCCTTGTCTCCTCT
AACCGTAACGTAACAAGCAATCTTCTCGTTACGCCTGATTCCGAATGACC
TCACAG
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