DC887852

Overview
NameDC887852
Unique NameDC887852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.731e-54
Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = -3 
Query:  180 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 554
            VRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.731e-54
Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = -3 
Query:  180 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 554
            VRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.261e-54
Identity = 107/125 (85.60%), Postives = 108/125 (86.40%), Query Frame = -3 
Query:  180 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 554
            VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:   56 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.274e-53
Identity = 103/123 (83.74%), Postives = 107/123 (86.99%), Query Frame = -3 
Query:  186 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 554
            VRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 7.274e-53
Identity = 103/123 (83.74%), Postives = 107/123 (86.99%), Query Frame = -3 
Query:  186 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 554
            VRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   56 VRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.287e-41
Identity = 80/122 (65.57%), Postives = 98/122 (80.33%), Query Frame = -3 
Query:  189 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKS 554
            VRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LE                G++H+VTKEDA+KWFQ +++GV+LNK+
Sbjct:   46 VRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.224e-40
Identity = 82/120 (68.33%), Postives = 91/120 (75.83%), Query Frame = -3 
Query:  195 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILN 554
            VRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:   62 VRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 6.610e-38
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = -3 
Query:  198 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 554
            VRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 6.610e-38
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = -3 
Query:  198 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 554
            VRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of DC887852 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 6.610e-38
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = -3 
Query:  198 VRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 554
            VRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   57 VRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of DC887852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL112_ARATH1.731e-5484.8060S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH1.731e-5484.8060S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_MEDSA2.261e-5485.6060S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL11_ORYSJ7.274e-5383.7460S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI7.274e-5383.7460S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_CHLRE1.287e-4165.5760S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_DROME9.224e-4068.3360S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_RAT6.610e-3864.7160S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB6.610e-3864.7160S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_MOUSE6.610e-3864.7160S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887852 EIC Citrus sinensis cDNA clone EIC0997 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887852 ID=DC887852; Name=DC887852; organism=Citrus sinensis; type=EST; length=556bp
GCCTTTACCATTATTCTAATAAAAGAACAGGGCAACCACGGCAAATTGTG
CTTAAAAAAAATCCACCAACTCAAAACTCCAAAGGAAAATATAGATTCTA
ATAAACAAAAATCGGGCAGCTGCCCAAAACTTAAGGGAAAAAAAAAACTC
AACAGGTTTCAAAGATCGCCTTAAGCACCAATGTTTTGGGACTTGTTAAG
GATAACTCCTTCATATTTCACTTGAAACCATTTCATGGCATCCTCCTTTG
TAACTCTATGTTGGATGCCAACGCGAGACTTGCATCTGCGGCGACGACCA
ACACGGTATCCAGGGCGTTCAAGGACAACAAAGAAGTCCATGCCATAAAT
ACCTGTGGAAGGGTCATACTTGATTCCGAGATCGATGTGCTCCTGAATGC
CAAAGCCGAAGCAGCCGGTATCGCTGAAGTTACGCCGCAGGAGCTCGTAC
TCCTTGACCTTCAAACCGCTCTCCAGAAGCTGCATTGCCTTGTCTCCTCT
AACCGTAACGTAACAAGCAATCTTCTCGTTACGCCTGATTCCGAATGACC
TCACAG
back to top