DC887600

Overview
NameDC887600
Unique NameDC887600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887600 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:   18 ALKVLRLQKGHKYCLLXRLSSEVGWNYYDTIKELEKKRXERAQVAYXRRKQLAKLRVKAEKAAEERLGPQLEII 239
            ALKV+RL+   K+  L RL+ EVGW Y      LE+KR E+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:  123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196
The following BLAST results are available for this feature:
BLAST of DC887600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL13A_RAT5.746e-1143.2460S ribosomal protein L13a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887600 EIC Citrus sinensis cDNA clone EIC0614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887600 ID=DC887600; Name=DC887600; organism=Citrus sinensis; type=EST; length=239bp
CAATACTTGATGGGAGCAATGATTTCTAGCTGGGGACCAAGCCTCTCCTC
GGCAGCCTTCTCAGCTTTGACCCTCAATTTAGCCAACTGCTTCCTCCTCN
CATAAGCTACCTGGGCCCTCTCCNTTCTCTTCTTCTCAAGCTCCTTAATG
GTGTCATAATAGTTCCATCCTACTTCAGATGAAAGCCTGNCCAACAAGCA
GTACTTGTGTCCTTTTTGAAGCCTCAAGACCTTGAGAGC
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