CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.096e-48
Identity = 84/143 (58.74%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRIQ+E+ +L  DPP  CSAGP GD+L++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF T+IYH N++S G++ LDIL+  WSPALT++KVLL++ S+  +P+  +P+VP IAH Y  D+ K+++LA EWT ++A
Sbjct:    4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.655e-48
Identity = 85/143 (59.44%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRIQ+E+ +L  DPP  CSAGP GD+L++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ +++QLA EWT ++A
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 84/143 (58.74%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+++L  DPP  CSAGP GD+LY+W A+I+GP+ +PY GG+FFL I FPTDYPFKPPKV F T+IYH N++S+GN+ LDILKD WSPALT++KVLL++ S+ T+ +  +P+VP IA +Y  DKAK++  A EWT ++A
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYA 147
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 84/143 (58.74%), Postives = 112/143 (78.32%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP G++L++W ATI+GP  +PY GG+FFL I FPTDYPFKPPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ SM T+P+   P+VP IAH+Y  D+A+++  A EWT ++A
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.135e-47
Identity = 82/143 (57.34%), Postives = 114/143 (79.72%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+++L  DPP  CSAGP GD+LY+W A+I+GPA +PY GG+FFL I FPTDYPFKPPK++F T+IYH N+++ GN+ LDILKD WSPALT++KVLL++ S+ T+ +  +P+VP IAH+Y  D+ K++  A EWT ++A
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.936e-47
Identity = 84/143 (58.74%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP GD+L++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++LA EWT ++A
Sbjct:    4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.303e-47
Identity = 82/143 (57.34%), Postives = 112/143 (78.32%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+++L  DPP  CSAGP GD+LY+W A+I+GP  +PY GG+FFL I FPTDYP KPPK+A  T+IYH N++S GN+ LDILKD WSPALTI+KVLL++ S+ T+ +  +P+VP IAH+Y +D+ K++  A EWT ++A
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.634e-47
Identity = 83/143 (58.04%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP G++L++W ATI+GP+ +PY GG+FFL I FPTDYPFKPPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ SM T+P+  +P+VP IAH+Y   +A+++  A EWT ++A
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.141e-46
Identity = 82/143 (57.34%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP GD++++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.141e-46
Identity = 82/143 (57.34%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP GD++++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UB2D4_HUMAN5.096e-4858.74Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_CAEEL6.655e-4859.44Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC5_YEAST8.692e-4858.74Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC1_COLGL8.692e-4858.74Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_YEAST1.135e-4757.34Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBCD1_DROME1.936e-4758.74Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_CANAL3.303e-4757.34Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC1_MAGGR5.634e-4758.04Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D2_XENLA2.141e-4657.34Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.141e-4657.34Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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