CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 48/137 (35.04%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            +R+ R+   +  DPP   SA P  DN+  W A IIGPA TP++ G F L + F   YP KPP V F++ ++H NV + G + LDIL++ WSP   +  VL +++S+  +P+  +      ++LY +++ ++ +   E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 490
            KR+Q E+  L M      SA P+ DN++ W  TI G   T ++G  + L ++F  DYPFKPPKV F T  +H NVD  GN+ LDIL+D WS A  +  +LL+++S+   P++ +P+    A L+
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW 161          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.397e-21
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            KR+ +E+  L M   +  SA P G+N++ WV TI GP  T Y G  + L + FP  YP+  P V FLT  +H NVD  G + LDILKD WS    +  +LL+++S+   P+  +P+    A ++ + K
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.825e-21
Identity = 50/135 (37.04%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQL 520
            KR++ E+  L M      SA P  D NL +W  TI GP+ T Y+G  F + ++FP +YP+ PP + F + ++H NVD +GN+ LDILKD WS    +  +LL+++S+   P+  +P+    A L+ +D  ++ +L
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRL 165          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.384e-21
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 490
            KR+Q E+  L M      SA P+ DN++ W  TI G   T ++G  + L +TF  DYPFK PKV F T  +H NVD  GN+ LDIL+D WS A  +  +LL+++S+   P++ +P+    A L+
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            ++R++AELN +P +  SAG   DN LY W   IIGP  T Y+GG+F   +TFP DYP +PPK+ F+T I+H NVD  G+V + IL             ++ W P  T+  ++++V SM  +P+  +P     A  + ED+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            ++R++AELN +P +  SAG   DN LY W   IIGP  T Y+GG+F   +TFP DYP +PPK+ F+T I+H NVD  G+V + IL             ++ W P  T+  ++++V SM  +P+  +P     A  + ED+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            ++R++AELN +P +  SAG   DN LY W   IIGP  T Y+GG+F   +TFP DYP +PPK+ F+T I+H NVD  G+V + IL             ++ W P  T+  ++++V SM  +P+  +P     A  + ED+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            KR+Q E+ +L     +  SA P  DN L  WV  I GP  TPY G  F + + FP +YPF PP + FL+ ++H NVD +GN+ LDILK+ WS    +  +LL+++S+   P+  +P+    A L+  D  ++
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD-------------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            ++R++AELN +P +  SAG   DN LY W   IIGP  T Y+GG+F   +TFP DYP +PPK+ F+T I+H NVD  G+V + IL +              W P  T+  ++++V SM  +P+  +P     A  + ED+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC2_NEUCR1.070e-2135.04Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC20_ARATH1.070e-2141.13Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2C_DROME1.397e-2138.28Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC11_SCHPO1.825e-2137.04Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC19_ARATH2.384e-2141.13Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UB2G1_RAT3.113e-2138.57Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE3.113e-2138.57Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN3.113e-2138.57Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC11_YEAST5.310e-2138.64Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2G1_MACFA5.310e-2138.57Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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