CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            +R+ R+   L  D P   S  P  DN+  W A I GP  TP++ G F L +TF   YP KPP V F+++++H N+ + G + LDIL++ WSP   +  +L +V+S+  +P+  +P     A L+ E+  ++++
Sbjct:    7 RRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYER 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.001e-19
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD-------------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 541
            +++++A++   P    SAG   DN +Y W   +IGP  T Y+GG F   + FP DYP KPPK+ F++ I+H N+D  GNV + IL D              W P  T+  +LL+V SM T+P+  +P     A +  E+ A+  +  A+   R
Sbjct:    8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRR 160          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 45/137 (32.85%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            +R+ R+   L  DPP   S  P  +N+  W A I GP  + ++G  F L + F  +YP   P V FL++++H NV + G++ LDIL++ WSP   I  +L +++S+  +P+ ++P     A L+ E+K ++++   E
Sbjct:    7 RRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.478e-19
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAK-HDQLAAEWT 535
            R+ +E   L  +  +D    P+ ++ LY WVA I GP  TPY+ G F LDI+ PT+YP +PP + F+T+I+H N+    G + LD+LK SWS   T+  V  ++ ++ + P   +P+     +L      K HD LA  +T
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYT 144          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPA-GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            RI +E   L  +P     A P   N   +   I G +  +P++GG F  ++    +YP   PKV F+T+IYH NVD    ++LDILKD WSPAL I  VLL+++++   P+  +P+   +   +  ++A+  + A  WT  +A
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.221e-18
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCS-------AGPKGD-NLYNWV-ATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            R+Q+E+  L  DPP   S       A   GD + ++ + A I GP  T Y  GIF L I  P  YPF+PP V+F T IYH N+D++G + LDIL    K +W P+L I+ VL ++R + + P+  + ++  ++  Y  ++   D  A E T ++AK
Sbjct:   10 RMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYAK 165          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.207e-18
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 466
            K +QRE      DP  D        N++ W A I GP+ TPY+GG+F L  + P  YP +PP+V FLT+I+H NV    G + LDILK++WSPA T+  V  A+ ++  +P   +P+
Sbjct:   13 KEVQREKVA---DP--DIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.373e-18
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            K++ RE+  L  DPP+        +++ +  A+I GP GTPY+GGIF + +    D+P  PPK  FLT+I+H NV   G + ++ LK  W P L I +VLL V+ +   P+  + +      L LE    + + A  +T   AK
Sbjct:   17 KQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHAK 160          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            +++ +E++ L  DPP+     P  +++ +   +I GP GTPY GGIF + +    D+P  PPK  FLT+I+H NV S G + +++LK  W   L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            + +E+  L  DPP      P  ++L +   TI GP GTPY GG+F + +    D+P  PPK  FLT+I+H NV + G + +++LK  W+  L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC2_CRYNE4.495e-2034.59Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC7_CAEEL1.001e-1934.64Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC2_DICDI1.708e-1932.85Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBCX_DICDI8.478e-1936.17Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UE2NL_HUMAN1.107e-1834.27Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC37_ARATH3.221e-1836.54Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC21_ARATH4.207e-1841.03Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2S_NEMVE9.373e-1834.72Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBE2S_RANCA2.088e-1733.86Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2S_HUMAN2.727e-1734.40Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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