CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLE---DKAKHDQL 520
            KR+ +E+ ELN    +  +  P  +++ N  A + GPAGTPY+GG F   +   +D+P  PPK  F+T+I+H NV   G + ++ LK  W+  L +  +LL ++ +   P+  + +    + L LE   D  KH +L
Sbjct:   12 KRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKL 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            + +E+  L  DPP      P  ++L +   TI GP GTPY GG+F + +    D+P  PPK  FLT+I+H NV + G + +++LK  W+  L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            NL  W   I+ P   PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            NL  W   I+ P   PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            NL  W   I+ P   PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            NL  W   I+ P   PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.562e-17
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHN 460
            KR+ +E+ +L  D P    AGPK +N ++ W   I GP  TPY  G+F   + FP DYP  PPK+ F   I H N+   G V + IL             ++ WSP  ++ K+LL+V SM + P++ +
Sbjct:    7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIES 134          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.562e-17
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            +R+ +E++ L  DPP+     P  +++ +    I GP GTPY GG+F + +    D+P  PPK  FLT+I+H NV + G + +++LK  W   L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            +++ +E++ L  DPP+     P  +++ +    I GP GTPY GGIF + +    D+P  PPK  FLT+I+H NV + G + +++LK  W   L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            + +E+  L  DPP      P  ++L +   TI GP GTPY GG+F + +    D+P  PPK  FLT+I+H NV   G + +++LK  W+  L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   16 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2S_DICDI2.727e-1732.85Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBE2S_BOVIN2.727e-1734.40Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UB2L3_PONAB2.727e-1735.00Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE2.727e-1735.00Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.727e-1735.00Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.727e-1735.00Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC7_YEAST3.562e-1735.94Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2SB_XENLA3.562e-1733.07Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_XENTR4.652e-1733.07Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_RAT4.652e-1734.40Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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