CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            KR+  E  +L ++PP+   AGP  + N + W A I+GP  T ++ G+F   ++FP DYP  PPK+ F   ++H N+   G V + IL              + WSP  ++ K+LL+V SM   P+  +      + ++ +D+ +  ++A +
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            KR+  E  +L ++PP+   AGP  + N + W A I+GP  T ++ G+F   ++FP DYP  PPK+ F   ++H N+   G V + IL              + WSP  ++ K+LL+V SM   P+  +      + ++ +D+ +  ++A +
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQD----CSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 544
            KR+ +E+ +L  + P+     CS   + DN+  W A ++ P   PY    F L I+FP +YPF+PP V F TRIYH NVD  G V L I+ K +W  +    +VL A+  +   P    P+   +A    +D    DQ+A E+TL+F
Sbjct:    5 KRVAKELEDLQKELPKYLRNLCS---EEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQF 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            KR+  E  +L ++PP+   AGP  + N + W A I+GP  T ++ G+F   ++FP DYP  PPK+ F   ++H N+   G V + IL              + WSP  ++ K+LL+V SM   P+  +      + ++ +D+ +  ++A +
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQ 157          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            NL NW   I G  GTP++GG+F L + F  DYP  PPK  F   ++H NV  +G V L IL++   W PA+TI ++LL ++ +   P++ +P       +Y +++ ++++       +F+
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            NL NW   I G  GTP++GG+F L + F  DYP  PPK  F   ++H NV  +G V L IL++   W PA+TI ++LL ++ +   P++ +P       +Y +++ ++++       +F+
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFS 156          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 45/145 (31.03%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKG-DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ +E  EL  + P   +AGP   D+ + W   I GP GTP++GG++   + FP+DYP  PP + F    +H NV   G V + IL              + WSP  ++ K+LL+V SM   P+  +        ++ ED+ ++
Sbjct:    8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEY 152          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.938e-16
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  GIF + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFT 442
            KR+Q+E+ +L  +PP  C +  +GDNL  WV  + G  G+ YQG  F L   F + YP   P+V F+ T   H ++ S G++ L IL D+WSPALT++ V L++ SM +
Sbjct:    7 KRLQKELLDLKTNPPP-CISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  G+F + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UB2G2_MOUSE1.768e-1629.80Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.768e-1629.80Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2L6_BOVIN2.309e-1636.73Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UB2G2_BOVIN2.309e-1629.80Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC9B_DANRE3.015e-1633.33SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9A_DANRE3.015e-1633.33SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC7_SCHPO3.015e-1631.03Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2S_DROAN3.938e-1632.37Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2W_DICDI5.143e-1641.28Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBE2S_DROYA5.143e-1631.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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