CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  G+F + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.717e-16
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            + +E++ L  DPP+     P  +++     +I GP GTPY GG+F + +    D+P  PP+  FLT+I+H NV   G + +++LK  W   L +  VLL ++ +  +P+  + +      L LED
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLED 140          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.773e-16
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  GIF + +T   D+P  PPK  FLT+I+H NV   G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.773e-16
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  GIF + +T   D+P  PPK  FLT+I+H NV   G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.773e-16
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  119 KRIQREMAEL---NMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +R+ RE+++L    M   ++  +    ++L  W   ++ P   PY  G F ++I FP  YPF PPK+ F T+IYH NVD  G V L I+  D+W P     +VL A+ ++  NP   +P+   +A  ++ +  K  + A E+T + A+
Sbjct:    5 RRLTRELSDLVEAKMSTLRNIESSD--ESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNAE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 1.146e-15
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 544
            R+ +E+ +L   PP         D N+  W A ++ P   PY    F L I+FP +YPFKPP + F T+IYH NVD  G + L I+  ++W P     +VL A+  +   P++  P+   +A L  ++     + A E+TLRF
Sbjct:    6 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.496e-15
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ RE+ E+   PP+         ++ +  A I GPAGTPY  G+F + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.496e-15
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ +E+ ++   PP+         ++ +  A I GPAGTPY  GIF + +T   D+P  PPK  FLT+I+H NV S G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.496e-15
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +++ +E+ +L   PP+     P   ++ +  ATI GP GTPY+GG F + ++   D+P  PPK  FLT+I+H NV   G + ++ LK  W   L +  +LL ++ +   P+  + +      L LE    + + A   T   AK
Sbjct:   16 RQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHAK 159          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            K++ +E+  L+  PP         ++     A I GP GTPY+ G+F + +    D+P  PPK  F+T+I+H NV S G + ++ LK  W+P+L +  VL  VR +   P   + +      + LE+  ++ + A  +T   AK
Sbjct:   13 KQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHAK 156          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2S_DROER5.143e-1631.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DANRE6.717e-1632.00Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_DROPS8.773e-1632.37Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE8.773e-1632.37Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBC84_DROME8.773e-1632.43Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UB2L6_HUMAN1.146e-1534.27Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBE2S_DROWI1.496e-1531.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROGR1.496e-1531.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_BRAFL1.496e-1530.56Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC22_ARATH1.954e-1530.56Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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