CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +++++ E+  +PPQ  S G   D +++ W   IIGP  T Y+GG F   ++FP DYP  PPK+ F T I+H NV   G V + IL              + W P  +   +L++V SM ++P+  +P
Sbjct:   10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESP 136          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ +E+ ++   PP+         ++ +  A I GPAGTPY  G+F + +T   D+P  PPK  FLT+I+H NV S G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGP--KGD---NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            +R+Q E  +   D P    A P  K D   +L  W A I G  GT + GG++ + + +P +YP KPPKV F    YH NV  +G + L IL +   W PA+T+ +++L V+ +  +P+ ++P        +  +KA++D+
Sbjct:    7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDK 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 535
            +++ +E+ ++   PP+         ++ +  A I GPAGTPY  GIF + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            NL NW   I G  GTP++GG+F L + F  DYP  PPK  F   ++H NV  +G V L IL++   W PA+TI ++ + ++ +   P++  P       +Y +++ ++++
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEK 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  119 KRIQREMAELNMDP---PQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +RIQ E  ++N D              +N++ W   I GP  + Y+   F L+I    DYP+  PKV F+T I H NV+  G++ L+IL KD W+ +L I  ++ ++  +   P+  +P    +A LY  DK  +D+   ++    +K
Sbjct:    7 RRIQNEYNKINNDKNLYADSFQINMVDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHSK 154          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGD-----NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            R+ +E      D P    A P  +     NL N    I G  GTP++GG+F L + F  DYP  PPK  F   ++H NV  +G V L IL++   W PA+TI ++LL ++ +   P++ +P       ++ +D+ ++++       +F+
Sbjct:    8 RLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKFS 156          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGD-----NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            R+  E      D P    A P  +     NLY W   I G   T ++GG++ L + F  DYP KPPK  F    +H NV  +G V L IL +   W P++TI  VLL ++ +  NP+  +P      HL+L +K ++D+
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDK 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI-VPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            ++++W A I GP  TPY+GG + LDI     YP  PP V F T+I H N+  + G V +DILK  WSPA ++    LA+ S+ +N    +P+ V     L   DK  ++ L    T  +AK
Sbjct:   33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAK 153          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.686e-15
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 445
            R+Q+E+ E  M+PP         DNL  W+  +IG  GT Y    + L + FP  YP + P+V FL     H ++ S G++ LDIL DSWSPA+T++ + +++ SM ++
Sbjct:   19 RLQKELVEWQMNPPTGFKHKVT-DNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSS 126          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC15_SCHPO1.954e-1533.86Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBE2S_DROVI2.553e-1530.94Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC9_YEAST2.553e-1532.86SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBE2S_DROMO3.334e-1530.94Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBC9_MESAU3.334e-1533.64SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC1_MIMIV4.354e-1530.41Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC9_PAGMA5.686e-1530.20SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_DICDI5.686e-1534.53Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC16_SCHPO5.686e-1538.02Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBC16_ARATH5.686e-1537.61Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
back to top