CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.427e-15
Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  134 EMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            E   L  +P +        +NL  W   + GP+ T Y+GG+F   ITFP +YP++PPK+ F + ++H N+   G + + IL          +WSPA  I  VLL+V S+F  P+  +P     A  Y +   K D
Sbjct:    9 EYRNLTENPSEHFKVSVNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKED 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.700e-15
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKV---LLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KR + +M +L M    D       D+L  +  T  GP  + YQGG++ + +  P  YP+K P V F+ +IYH NVD S+G V LD++  +WSP   +  V    L    ++ NPS  +P     A L + D+A ++    E+  ++AK
Sbjct:    6 KRREMDMMKLMMS---DYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPS--DPFNGEAASLLMRDRAAYELKVKEYCEKYAK 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14
Identity = 47/148 (31.76%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKV---LLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KR + +M +L M    D       D +  +     GP  + YQGG++ + +  P  YP+K P V F+T+IYH NVD  +G+V LD++  +WSP   +  V    L    ++ NPS  +P+    A L + D+  ++Q   E+  ++AK
Sbjct:    6 KRREMDMMKLMMS---DYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPS--DPLNGEAAALMMRDRPAYEQRVKEYCEKYAK 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +Q+++ +L   P    SAG   + N++ W  TIIGP  T Y+GG F   +TFP +YP  PP V F + ++H NV S G V + IL              + W+P  T+  ++L++ SM + P+  +P
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESP 135          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +Q+++ +L   P    SAG   + N++ W  TIIGP  T Y+GG F+  ++FP +YP  PP V F + I+H NV   G V + IL              + W+P  T+  ++L++ SM + P+  +P
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESP 135          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 39/121 (32.23%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAH 484
            R+Q++++EL++ P    +  P  +++ N+  T+    G  YQGG F        ++P +PPKV  L ++YH N+D  GNV L+IL++ W P L++  V++ ++ +F  P+  +P+    AH
Sbjct:   28 RVQKDLSELSL-PSTMKTHFPSAEDIMNFELTVRPDEGF-YQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAH 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.814e-14
Identity = 41/116 (35.34%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 466
            RIQ+++ ELN+  P  C+   P  ++L N+   II P    Y+ G F  +    ++YP +PPKV   T++YH N+D  GNV L+IL++ W+P L I  ++  ++ +F  P+  +P+
Sbjct:   30 RIQKDINELNL--PNTCATDFPDPNDLLNF-KLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPL 142          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.287e-14
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 445
            R+Q+E++E  ++PP         DNL  WV  + G  GT Y    + L + FP  YP + P+V F+     H ++ S G++ LDIL DSWSPA+T++ V +++ SM ++
Sbjct:   19 RLQKELSEWQVNPPTGFKHRVT-DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 42/138 (30.43%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            +  E   L  +P ++       +N+  W   + GPA T Y+GG+F   I FP +YP++PP++ F + ++H N+ S G V + IL          +WSP   I  +LL+V S+   P+  +P     A  Y     K D
Sbjct:    6 LMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKED 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKV---LLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KR + ++ +L M    D       D +  +     GP  + Y+GG++ + +  P  YP+K P V F+T+IYH NVD  +G+V LD++  +WSP   +  V    L    ++ NPS  +P+    A L + D+  ++Q   E+  ++AK
Sbjct:    6 KRREMDLMKLMMS---DYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPS--DPLNGEAAALMMRDRPTYEQRVKEYCEKYAK 148          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC_ASFK57.427e-1533.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC6_ARATH9.700e-1533.11Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC4_ARATH1.655e-1431.76Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC7_ARATH2.161e-1433.86Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH2.161e-1433.07Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC12_YARLI2.161e-1432.23NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_DROME4.814e-1435.34NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC18_ARATH6.287e-1436.70Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC_ASFP48.211e-1430.43Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC5_ARATH8.211e-1430.41Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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