CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +LYNW   I GP  T Y+GG F   I FP DYP+ PP   FLT+++H N+   G+V + IL              + W+P   +  +LL+V S+   P+  +P
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +LYNW   I GP  T Y+GG F   I FP DYP+ PP   FLT+++H N+   G+V + IL              + W+P   +  +LL+V S+   P+  +P
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +LYNW   I GP  T Y+GG F   I FP DYP+ PP   FLT+++H N+   G+V + IL              + W+P   +  +LL+V S+   P+  +P
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 44/135 (32.59%), Postives = 66/135 (48.89%), Query Frame = 2
Query:  134 EMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            E   L ++P +        DNL  W   + GP  T Y+GG+F   I FP  YP++PP++ F + ++H N+ S G + + IL          +WSPA  I  VLL+V S+   P+  +P     A  Y +   K D
Sbjct:    9 EYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKED 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMF-TNPSLHNP 463
            R+Q+E++E  ++PP         DNL  W   + G  GT Y    + L + FP  YP + P+V F++    H ++ S G++ LDIL DSWSPA+T+  V +++ SM  ++P+   P
Sbjct:   19 RLQKELSEWQLNPPTGFRHKVT-DNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRP 133          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            RIQ+++ ELN+  P+ C       D+L N+   I    G  Y+GG F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   33 RIQKDITELNL--PKTCEIEFSDHDDLLNFKLVICPDEGF-YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +LYNW   I GP  T Y+GG F   + FP DYP+ PP   FLT+++H N+   G+V + IL              + W+P   +  +LL+V S+   P+  +P
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            +LYNW   I GP  T Y+GG F   + FP DYP+ PP   FLT+++H N+   G+V + IL              + W+P   +  +LL+V S+   P+  +P
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 37/142 (26.06%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            R+QRE+ ++  +   D        ++  W     GP  TPY+ G +   I F  +YP   P + F+T I HCN+++ G V   IL  +++P + I+ +L  +  +  NP +++P+   +A +Y +    ++    ++  +FA
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFA 1278          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAK 508
            +Q+++ +L   P    SAG   + N++ W  +I+GP  T Y+GG F   ++FP +YP  PP V F + ++H NV S G V + IL              + W+P  T+  ++L++ SM + P+  +P     A  + +++A+
Sbjct:   10 LQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAE 151          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UB2R2_RABIT8.211e-1435.92Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE8.211e-1435.92Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN8.211e-1435.92Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC_ASFM21.072e-1332.59Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC15_ARATH1.072e-1335.34Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC12_XENLA1.072e-1333.08NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UB2R1_MOUSE1.072e-1334.95Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN1.072e-1334.95Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC4_MIMIV1.401e-1326.06Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC14_ARATH1.401e-1329.58Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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